PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00077.154
Common NameAMTR_s00077p00151100, LOC18432402
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 288aa    MW: 33014.4 Da    PI: 10.0477
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.154genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18129217197
                                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                               f+k +++s+v++  +l lp kf++ h   ++++ t++led +g ++e ++    ++++  l++GWk+F+
  evm_27.model.AmTr_v1.0_scaffold00077.154 129 FVKPMVRSHVSSCFWLGLPSKFCRGHL--PRKDSTMILEDGDGLEFETNY--IASREG--LSGGWKGFA 191
                                               89*********************9995..345569***************..555555..9******** PP

                                               HHHT--TT-EEEEEE-SSSEE..EEEEE CS
                                        B3  70 kangLkegDfvvFkldgrsefelvvkvf 97 
                                                +++L++gD +vF+l++ ++f  +v ++
  evm_27.model.AmTr_v1.0_scaffold00077.154 192 VDHKLDDGDALVFELIEPTKF--KVYII 217
                                               ***************987777..77766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-22121219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-24123220IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-26127218No hitNo description
PfamPF023621.8E-17129217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478129220IPR003340B3 DNA binding domain
SMARTSM010191.1E-22129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGMNSYEELR NQRLQENLKR FKDLGLQSVS LDLSEASKSE TKTIQRTVKP RSKGSDEEFM  60
ILRRSSRASK NPVPVYHEVG TILPRYRMRF ARKSSRGGDI RYASDEERIY AFKKAEKLQS  120
NLKSGHPSFV KPMVRSHVSS CFWLGLPSKF CRGHLPRKDS TMILEDGDGL EFETNYIASR  180
EGLSGGWKGF AVDHKLDDGD ALVFELIEPT KFKVYIIKVS EYNNEEKEKP TGSTKKTKCE  240
SRKKYNWTDN DNVYSFETEV TRETQSAQRA ERAAKRRCAT SLQKIIP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842572.10.0B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-62Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLW1P3280.0W1P328_AMBTC; Uncharacterized protein
STRINGERN042470.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-59B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]