PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00059.107
Common NameAMTR_s00059p00130960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 244aa    MW: 27684.3 Da    PI: 9.9711
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00059.107genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.6e-15128214193
                                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                               f+k +++s+v    +l lp  f++++  +k ++  +tlede+ ++++ ++  +k++    l++GW++F+
  evm_27.model.AmTr_v1.0_scaffold00059.107 128 FVKPMLHSHVKVGFWLGLPVGFCKSNL-PK-NDAIITLEDEDCNEFQTNFLAQKTG----LSAGWRGFA 190
                                               89*********************9993.32.4568***************444444....********* PP

                                               HHHT--TT-EEEEEE-SSSEE..E CS
                                        B3  70 kangLkegDfvvFkldgrsefelv 93 
                                                +++L++gD vvF+l++  +f+ +
  evm_27.model.AmTr_v1.0_scaffold00059.107 191 IDHELNDGDAVVFQLVKPLKFKVM 214
                                               **************9986666444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-18122215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20123216IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-22126215No hitNo description
PROSITE profilePS5086310.997128219IPR003340B3 DNA binding domain
SMARTSM010199.0E-17128220IPR003340B3 DNA binding domain
PfamPF023623.4E-13128215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAVEPAYEE FRKQRLEENR RRMQELNLAA LSQTLKKSCP KPSPSKYCKP KTPRIDMGLV  60
EVRRSSRVAA MPAASYKEVK YEYMEMPRRI YKRRALLDRS HISDGARTKA IERAEVLQSN  120
LEPIYPSFVK PMLHSHVKVG FWLGLPVGFC KSNLPKNDAI ITLEDEDCNE FQTNFLAQKT  180
GLSAGWRGFA IDHELNDGDA VVFQLVKPLK FKVMIWLSAS VIALVDLFKA LHSSQPKVIV  240
VAY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627763.11e-160B3 domain-containing protein At3g19184
RefseqXP_020530177.11e-160B3 domain-containing protein At3g19184
RefseqXP_020530178.11e-160B3 domain-containing protein At3g19184
SwissprotQ1G3M33e-65Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLU5D8330.0U5D833_AMBTC; Uncharacterized protein
STRINGERN175620.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-62B3 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]