PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.198
Common NameAMTR_s00045p00168140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 288aa    MW: 32234.5 Da    PI: 5.1144
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.198genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS102.84.8e-327927211203
                                      GRAS  11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseel 78 
                                                +s+++   a++lL      +sp g+p+qRl+++f eAL +r+    ++  k+l+p+  + +   ++ l
  evm_27.model.AmTr_v1.0_scaffold00045.198  79 EISNQQYDSAKRLLVVRDFESSPVGNPVQRLVFHFSEALWERVET--ETGLKSLTPEYFEGEAaADKML 145
                                               67888888999999998999************************9..5555666666665554222222 PP

                                      GRAS  79 aalkl....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppsl 142
                                                 ++      +++ P  k+ ++ta q I  a+++++++  iD+++  Gl+W   +q+L++R+  +   l
  evm_27.model.AmTr_v1.0_scaffold00045.198 146 EGYHPavlaIYKTVPSAKLLQFTASQVIISALASATKIYLIDLEARRGLHWNMVMQSLSERSeYPVEIL 214
                                               2222234459****************************************************555569* PP

                                      GRAS 143 RiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEala 203
                                               ++T v++    s+e++eetg +L +fA++l++pf fn ++++++e+   eeL ++++gE +a
  evm_27.model.AmTr_v1.0_scaffold00045.198 215 KMTMVDD----STERVEETGTQLLNFAKTLKLPFVFNSITVSNVEQDMREELfELDRGELVA 272
                                               *******....9***************************99999877666655999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.24543287IPR005202Transcription factor GRAS
PfamPF035141.7E-2979272IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MFTHHTLSLH ESEALCGLSP SPINTHFQAH SMIKRRFLPR HSGGCAVKQS TNIDTPIGGE  60
RELGGERELG GERKLSTEEI SNQQYDSAKR LLVVRDFESS PVGNPVQRLV FHFSEALWER  120
VETETGLKSL TPEYFEGEAA ADKMLEGYHP AVLAIYKTVP SAKLLQFTAS QVIISALASA  180
TKIYLIDLEA RRGLHWNMVM QSLSERSEYP VEILKMTMVD DSTERVEETG TQLLNFAKTL  240
KLPFVFNSIT VSNVEQDMRE ELFELDRGEL VASLLGEDDQ SHQKLVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1210228636226GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621965.11e-147PREDICTED: uncharacterized protein LOC18430221
TrEMBLW1P3980.0W1P398_AMBTC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2520734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.18e-16GRAS family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]