PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.197
Common NameAMTR_s00045p00168010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 226aa    MW: 25884.1 Da    PI: 6.369
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.197genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS177.31.1e-545223154374
                                      GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsle 221
                                               s e++eetg rL +fA++l++pf f+ ++++++e    eeL +++++E++aV   + l+++l ++ +le
  evm_27.model.AmTr_v1.0_scaffold00045.197   5 SGERMEETGTRLLNFAKTLNLPFVFKSITVSNVELDMREELfELDREESVAVYAPMVLKTMLIKPRCLE 73 
                                               6799************************999999876666659*******************9999999 PP

                                      GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                                               +    +++++++l P ++v++e e++hns+sF++rf+e l +ysa fdsl+a + + + +r  +Er+++
  evm_27.model.AmTr_v1.0_scaffold00045.197  74 K----TIRVIRNLCPYIMVLTEVESKHNSPSFVHRFIEVLFFYSAYFDSLDAFMEAVDPDRLAMERAFM 138
                                               9....**************************************************************** PP

                                      GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                                               g +i+n+va eg+er+ rh    +Wr  ++++GF++v+l  +a + ak +++ +  s+  ++e + ++l
  evm_27.model.AmTr_v1.0_scaffold00045.197 139 GSAIRNMVAGEGEERIIRHVGIDTWRLFFNRVGFEEVELVRDASNLAKVMVKIYRhSESISLEMNGKAL 207
                                               *******************************************************9999********** PP

                                      GRAS 359 vlgWkdrpLvsvSaWr 374
                                               + gWk++pL svSaWr
  evm_27.model.AmTr_v1.0_scaffold00045.197 208 TVGWKGKPLHSVSAWR 223
                                               ***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.1621202IPR005202Transcription factor GRAS
PfamPF035143.9E-525223IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVGDSGERME ETGTRLLNFA KTLNLPFVFK SITVSNVELD MREELFELDR EESVAVYAPM  60
VLKTMLIKPR CLEKTIRVIR NLCPYIMVLT EVESKHNSPS FVHRFIEVLF FYSAYFDSLD  120
AFMEAVDPDR LAMERAFMGS AIRNMVAGEG EERIIRHVGI DTWRLFFNRV GFEEVELVRD  180
ASNLAKVMVK IYRHSESISL EMNGKALTVG WKGKPLHSVS AWRCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-239223160375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621965.11e-161PREDICTED: uncharacterized protein LOC18430221
TrEMBLW1P2H91e-166W1P2H9_AMBTC; Uncharacterized protein
STRINGPOPTR_0010s15370.13e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2520734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-38RGA-like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]