PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00003.139
Common NameAMTR_s00003p00165930, LOC18431354
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 205aa    MW: 20954 Da    PI: 4.912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00003.139genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-191362255
                                       AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                              +y GVr+++ +grWvAeI+d      ++ r +lg++++ae+Aa+a+++a+ +l+g
  evm_27.model.AmTr_v1.0_scaffold00003.139 13 KYVGVRQRP-SGRWVAEIKD----SaHKVRLWLGTYDSAEDAARAYDEAAFSLRG 62
                                              8********.7*********....3345*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-281370IPR001471AP2/ERF domain
SMARTSM003804.2E-351376IPR001471AP2/ERF domain
CDDcd000187.57E-291369No hitNo description
PROSITE profilePS5103220.6791370IPR001471AP2/ERF domain
PfamPF008471.7E-141362IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-201370IPR016177DNA-binding domain
PRINTSPR003671.2E-71425IPR001471AP2/ERF domain
PRINTSPR003671.2E-73652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRMCRKPAKG REKYVGVRQR PSGRWVAEIK DSAHKVRLWL GTYDSAEDAA RAYDEAAFSL  60
RGPGARTNFG NPTSTSNQVS ANEDPTPFSF EGPEESTCVV GGLRGALQAK LMEGRGLSRG  120
TVVGPASSAI NSVSEKGSGD KSEMWNTCLG GGGGGGGGGG GGGEGPGESG GGGDGNFEFV  180
GGLEEGENGS WAWDLLLPSM FSPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1613691471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841542.11e-144ethylene-responsive transcription factor CRF1
TrEMBLW1P0691e-142W1P069_AMBTC; Uncharacterized protein
STRINGERN032171e-143(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-16related to AP2 11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]