PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.490
Common NameAMTR_s00002p00264880, LOC18429496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 306aa    MW: 34228 Da    PI: 10.148
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.490genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.3e-32239296359
                                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                               D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  evm_27.model.AmTr_v1.0_scaffold00002.490 239 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHS 296
                                               9************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.9E-19190235IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.7E-34225296IPR003657WRKY domain
PROSITE profilePS5081130.067232298IPR003657WRKY domain
SuperFamilySSF1182902.22E-27235296IPR003657WRKY domain
SMARTSM007744.0E-39237297IPR003657WRKY domain
PfamPF031061.3E-27239295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDEVEEANRA AVECCHRVLS LLSQPQDQLQ LKTLMGSTTS EALVKFQKVV SLLNQRLGHA  60
RFRKAPSKPS TCQQSLLETT QIEQPISDSK TQLQIQGPNT HLQIIQQQQI QHMMQFQQQM  120
KLQAQADLMY RRSNSGSMNL KFDNSSCTPT ISSRSFISSL SMDGSVASMD GKPFHLIPAS  180
SQDRSGHSQK RRCSGKGEDG SGKCGTSGRC HCSKRRKIRV KRSIKVPAIS NKLADIPPDE  240
YSWRKYGQKP IKGSPHPRGY YKCSSMRGCP ARKHVERCLE DPSMLIVTYE GEHNHSRLLS  300
QPNQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-212332951071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838845.10.0probable WRKY transcription factor 21
SwissprotQ93WU61e-94WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLW1P1850.0W1P185_AMBTC; Uncharacterized protein
STRINGERN014140.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.16e-70WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]