PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G63260.1
Common NameMDC12.23
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 435aa    MW: 48606.7 Da    PI: 6.6864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G63260.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.42.8e-14103127226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  + e C+f++rtG CkyG++CkF+H+
  AT5G63260.1 103 DSEDCSFYMRTGSCKYGSSCKFNHP 127
                  5699********************9 PP

2zf-CCCH344.8e-11153174526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++++rtG CkyG++C+F+H 
  AT5G63260.1 153 ECKYYFRTGGCKYGESCRFSHM 174
                  6********************6 PP

3zf-CCCH38.91.4e-12196220226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+f++r+G Ck+G+ CkF+H+
  AT5G63260.1 196 GEKECPFYMRNGSCKFGSDCKFNHP 220
                  7899********************9 PP

4zf-CCCH19.91.3e-06336361227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C ++++tG Ck+  +Ck++H++
  AT5G63260.1 336 DQPECTYYLKTGDCKFKYKCKYHHPK 361
                  689*********************96 PP

5zf-CCCH32.91.1e-10382406226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++r+G+Ck+G+ C+F H+
  AT5G63260.1 382 DQSMCTHYSRYGICKFGPACRFDHS 406
                  5678********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.9E-798129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338101129IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-11103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6107126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68148176IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6148176IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8153174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-6154175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286194222IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6194221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6196221IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10196220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4200219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112334362IPR000571Zinc finger, CCCH-type
SMARTSM003560.079334361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5338364IPR000571Zinc finger, CCCH-type
PfamPF146080.44340360No hitNo description
PROSITE profilePS5010314.906380408IPR000571Zinc finger, CCCH-type
SMARTSM003560.019380407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6381408IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5384406IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7386406IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSKPEETSDP NPTGPDPSRS SSDEVTVTVA DRAPSDLNHV SEELSDQLRN VGLDDSAKEL  60
SVPISVPQGN VETDSRALFG SDQKEEEEGS EKRMMMVYPV RPDSEDCSFY MRTGSCKYGS  120
SCKFNHPVRR KLQIGRERVR ERDEDVENPK LMECKYYFRT GGCKYGESCR FSHMKEHNSP  180
ASVPELNFLG LPIRPGEKEC PFYMRNGSCK FGSDCKFNHP DPTAIGGVDS PLYRGNNGGS  240
FSPKAPSQAS STSWSSTRHM NGTGTAPFIP SMFPHSRGVT PQASDWNGYQ ASSAYPPERS  300
PLAPSSYQVN NSLAETSSFS QYQHQMSVEE FPERPDQPEC TYYLKTGDCK FKYKCKYHHP  360
KNRLPKQAAF SFNDKGLPLR PDQSMCTHYS RYGICKFGPA CRFDHSIPPT FSPSSSQTVE  420
ARQVGANGNE DDSWH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.433500.0bud| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible247366_at0.0
Expression AtlasAT5G63260-
AtGenExpressAT5G63260-
ATTED-IIAT5G63260-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G63260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G63260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201131.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A178UBV50.0A0A178UBV5_ARATH; Uncharacterized protein
STRINGAT5G63260.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]