PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G60142.1
Common NameF15L12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 346aa    MW: 40189.7 Da    PI: 4.3698
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G60142.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.27.9e-1515105194
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  ffkv +p d++    l lp +f +   ++k  +k +++++  g+ W+v ++  ++ s+r+v+ +GWk+ vk+ +Lk g+f+ F++dg+ +f++++
  AT5G60142.1  15 FFKVYLPDDSGD--DLELPISFNSF--LPKSLPKNVIVRSIYGNIWKVAFRKfCGDSERFVMVNGWKKIVKDEDLKGGEFLEFEFDGSWCFNFCI 105
                  788886666554..4999*999743..56779999***************666********************************9988886555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-209111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1511108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.71613109IPR003340B3 DNA binding domain
CDDcd100171.99E-1413106No hitNo description
SMARTSM010192.4E-1315109IPR003340B3 DNA binding domain
PfamPF023621.3E-1215105IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-12247345IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-7250345IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0069252343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MMNRGISVDD CLPKFFKVYL PDDSGDDLEL PISFNSFLPK SLPKNVIVRS IYGNIWKVAF  60
RKFCGDSERF VMVNGWKKIV KDEDLKGGEF LEFEFDGSWC FNFCIYGRAT CKRLRSSVQI  120
TVLDDNDDGF NDDQDYGEEV KSSENFIVLD DDDISDVQDY NEEDTSSEDI TALDDADNDD  180
INDVQDYVEE DTSSEDIIVI DDDDDDDDQD YGDDDHADVE KERWRGVKTE KKKKGSSGEH  240
DRQYLDNHMN PFFTVNQHRQ IKYNMLRIPT KVITKYGLHF PEFINLIDPL EKNFGKLKRK  300
VKGQTIKGFR SIIRRNNVKL NDKVICELEK EMDGLVREIK VHVIRG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT5G60142
AtGenExpressAT5G60142
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G60142.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G60142
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0266320.0AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001119463.20.0AP2/B3-like transcriptional factor family protein
SwissprotQ9LST30.0Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLR0GS241e-158R0GS24_9BRAS; Uncharacterized protein (Fragment)
STRINGAT5G60142.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]