PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G57720.1
Common NameMRI1.8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 300aa    MW: 34398.6 Da    PI: 4.6552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G57720.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91e-1913104199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+k++  +++  s++lv+p+++ + + ++   ++t +l++++gr W+v+   +k+++  + l++GW +Fvk+ngL ++Df++F++dg+++f  +v+++
  AT5G57720.1  13 FLKIF--NSHEDSQLLVIPRSYNRYYPNP--LPQTAVLKNPEGRFWNVQW--TKSQEViISLQEGWVKFVKDNGLIDRDFLLFTYDGSRSF--WVRIH 102
                  66777..66667778*******9777655..889****************..888888999************************998888..**999 PP

                  -S CS
           B3  98 rk 99 
                  r+
  AT5G57720.1 103 RN 104
                  86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-209104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-1910103IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-1711103No hitNo description
PROSITE profilePS5086313.53511105IPR003340B3 DNA binding domain
PfamPF023625.9E-1813104IPR003340B3 DNA binding domain
SMARTSM010195.1E-1813105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-7204295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-8204286IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.011209299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVLENGFPPY PDFLKIFNSH EDSQLLVIPR SYNRYYPNPL PQTAVLKNPE GRFWNVQWTK  60
SQEVIISLQE GWVKFVKDNG LIDRDFLLFT YDGSRSFWVR IHRNGLPLEP TAPIKIQEIS  120
DDEDETNGDG DPHMEEEGDT DENMIVSLSL GSSDEVGDDD DDDYDTAICD EVNKASGSSK  180
KGRVTRKHRD DSLASITPQI FLADPNNPFF ISTSSCSRRI LVIARQVIKD YGLNFDGTVN  240
LIDGFGELTR KVGKWKDRVV IYKWNEMFTR NKVKQGDVII CEIIREEDVV RSIKVHFVKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-141310611103At1g16640
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453593680.0
Genevisible247875_at0.0
Expression AtlasAT5G57720-
AtGenExpressAT5G57720-
ATTED-IIAT5G57720-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G57720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G57720
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937970.0AB493797.1 Arabidopsis thaliana At5g57720 mRNA for hypothetical protein, partial cds, clone: RAAt5g57720.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200580.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9FHH10.0Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLD7MNV01e-172D7MNV0_ARALL; Putative uncharacterized protein
STRINGAT5G57720.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Publications ? help Back to Top
  1. Kaneko T, et al.
    Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence features of the regions of 1,011,550 bp covered by seventeen P1 and TAC clones.
    DNA Res., 1999. 6(3): p. 183-95
    [PMID:10470850]
  2. Schmid M, et al.
    Dissection of floral induction pathways using global expression analysis.
    Development, 2003. 130(24): p. 6001-12
    [PMID:14573523]
  3. Gómez-Mena C,de Folter S,Costa MM,Angenent GC,Sablowski R
    Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis.
    Development, 2005. 132(3): p. 429-38
    [PMID:15634696]
  4. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  5. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]