PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G51790.1
Common NameBHLH120, EN4, MIO24.8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 204aa    MW: 22995.3 Da    PI: 10.2398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G51790.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.3e-082879255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                 +  h  +Er+RR+++   f+ Lr+ lP       ++K   ++ +  Av +Ik+ q
  AT5G51790.1 28 KLLHRNIERQRRQEMAILFASLRSQLPLkY---IKGKRAMSDHVNGAVSFIKDTQ 79
                 567999**********************77...9999999***********9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.11E-122399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-72483No hitNo description
PROSITE profilePS5088811.2992678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-72896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-52879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MNPSNNPKKT RHQSHMPQER DETKKEKKLL HRNIERQRRQ EMAILFASLR SQLPLKYIKG  60
KRAMSDHVNG AVSFIKDTQT RIKDLSARRD ELKREIGDPT SLTGSGSGSG SSRSEPASVM  120
VQPCVSGFEV VVSSLASGLE AWPLSRVLEV LHGQGLEVIS SLTARVNERL MYTIQVEVNS  180
FDCFDLAWLQ QKLIEQLVLS TTRH
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341883250.0
Expression AtlasAT5G51790-
AtGenExpressAT5G51790-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G51790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G51790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937890.0AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001332480.11e-149basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqNP_199992.21e-150basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9FLI01e-151BH120_ARATH; Transcription factor bHLH120
TrEMBLA0A1P8BH391e-148A0A1P8BH39_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGAT5G51790.11e-149(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Representative plantOGRP1638838
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  4. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  5. De Paepe A,Vuylsteke M,Van Hummelen P,Zabeau M,Van Der Straeten D
    Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis.
    Plant J., 2004. 39(4): p. 537-59
    [PMID:15272873]
  6. Rehrauer H, et al.
    AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.
    Plant Physiol., 2010. 152(2): p. 487-99
    [PMID:20032078]
  7. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]