PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G49300.1
Common NameGATA16, K21P3.18
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 139aa    MW: 15321.5 Da    PI: 10.3509
Description GATA transcription factor 16
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G49300.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-193871134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  AT5G49300.1 38 CADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKR 71
                 ********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-123283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2553268IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-123372No hitNo description
Gene3DG3DSA:3.30.50.101.4E-143671IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.25E-133792No hitNo description
PfamPF003203.3E-173872IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403863IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC  60
NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS LMDLGIRKRS TVEKQRQKLG  120
EEEQAAVLLM ALSYGSVYA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT5G49300
AtGenExpressAT5G49300
Functional Description ? help Back to Top
Source Description
TAIREncodes a member of the GATA factor family of zinc finger transcription factors.
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G49300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G49300
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0293380.0BT029338.1 Arabidopsis thaliana At5g49300 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199741.13e-98GATA transcription factor 16
SwissprotQ9FJ101e-100GAT16_ARATH; GATA transcription factor 16
TrEMBLC0SVS92e-98C0SVS9_ARATH; Putative uncharacterized protein At5g49300 (Fragment)
STRINGAT5G49300.15e-98(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Representative plantOGRP6817287
Publications ? help Back to Top
  1. Asamizu E, et al.
    Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones.
    DNA Res., 1998. 5(6): p. 379-91
    [PMID:10048488]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Jeong MJ,Jeong MJ,Shih MC
    Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2003. 300(2): p. 555-62
    [PMID:12504119]
  4. Reyes JC,Muro-Pastor MI,Florencio FJ
    The GATA family of transcription factors in Arabidopsis and rice.
    Plant Physiol., 2004. 134(4): p. 1718-32
    [PMID:15084732]
  5. Manfield IW,Devlin PF,Jen CH,Westhead DR,Gilmartin PM
    Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.
    Plant Physiol., 2007. 143(2): p. 941-58
    [PMID:17208962]
  6. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  7. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  8. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]