PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G43410.1
Common NameERF096, MWF20.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 131aa    MW: 14342.8 Da    PI: 7.7584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G43410.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.8e-211464255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+++AeIrd ++ g   r++lg+f+taeeAa+a+++a+ +++g
  AT5G43410.1 14 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 64
                 8********.**********65443..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.84E-261473No hitNo description
PfamPF008479.1E-161464IPR001471AP2/ERF domain
PROSITE profilePS5103224.0261472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-321474IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-241474IPR016177DNA-binding domain
SMARTSM003801.1E-351478IPR001471AP2/ERF domain
PRINTSPR003674.7E-121526IPR001471AP2/ERF domain
PRINTSPR003674.7E-123854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDQGGRGVGA EHGKYRGVRR RPWGKYAAEI RDSRKHGERV WLGTFDTAEE AARAYDQAAY  60
SMRGQAAILN FPHEYNMGSG VSSSTAMAGS SSASASASSS SRQVFEFEYL DDSVLEELLE  120
EGEKPNKGKK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-9311311131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184223290.0
Genevisible249154_at1e-137
Expression AtlasAT5G43410-
AtGenExpressAT5G43410-
ATTED-IIAT5G43410-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. This work revealed ERF96 as a key player of the ethylene responsive factor (ERF) network that positively regulates the Arabidopsis resistance response to necrotrophic pathogens.
    [PMID: 26038230]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G43410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G43410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256380.0AB025638.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4470340.0DQ447034.1 Arabidopsis thaliana clone pENTR221-At5g43410 ethylene-responsive factor (At5g43410) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199154.17e-92Integrase-type DNA-binding superfamily protein
SwissprotQ9LSX06e-93ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A178UK172e-90A0A178UK17_ARATH; Uncharacterized protein
STRINGAT5G43410.13e-91(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. O
    Identification of Arabidopsis ethylene-responsive element binding factors with distinct induction kinetics after pathogen infection.
    Plant Physiol., 2002. 128(4): p. 1313-22
    [PMID:11950980]
  3. Hass C, et al.
    The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.
    EMBO J., 2004. 23(16): p. 3290-302
    [PMID:15282545]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  6. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]
  7. Catinot J, et al.
    ETHYLENE RESPONSE FACTOR 96 positively regulates Arabidopsis resistance to necrotrophic pathogens by direct binding to GCC elements of jasmonate - and ethylene-responsive defence genes.
    Plant Cell Environ., 2015. 38(12): p. 2721-34
    [PMID:26038230]
  8. Wang X,Liu S,Tian H,Wang S,Chen JG
    The Small Ethylene Response Factor ERF96 is Involved in the Regulation of the Abscisic Acid Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1064
    [PMID:26635862]