PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G43250.1
Common NameNF-YC13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 130aa    MW: 14672 Da    PI: 10.3349
Description nuclear factor Y, subunit C13
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G43250.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC50.74e-169891897
        NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                 + e+P+ r+kki+k d+d+++i +ea  +++ + elf+  l+ +s + + e+kr+t++   +  av+r + + dfl+d  p
  AT5G43250.1  9 RPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEKKRKTVNLDHLRIAVKRHQpTSDFLLDSLP 89
                 668***************************************************************9976489*****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.1E-211174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.52E-1811104IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.3E-201289IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEEEEGSIRP EFPIGRVKKI MKLDKDINKI NSEALHVITY STELFLHFLA EKSAVVTAEK  60
KRKTVNLDHL RIAVKRHQPT SDFLLDSLPL PAQPVKHTKS VSDKKIPAPP IGTRRIDDFF  120
SKGKAKTDSA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT5G43250
AtGenExpressAT5G43250
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G43250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G43250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0170700.0AB017070.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNL12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199139.14e-90nuclear factor Y, subunit C13
TrEMBLQ9FHS04e-90Q9FHS0_ARATH; Nuclear factor Y, subunit C13
STRINGAT5G43250.11e-89(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Representative plantOGRP94721213
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Osuna D, et al.
    Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.
    Plant J., 2007. 49(3): p. 463-91
    [PMID:17217462]