PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G41090.1
Common Nameanac095, NAC095
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 212aa    MW: 24166 Da    PI: 4.2419
Description NAC domain containing protein 95
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G41090.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.95.5e-2581431128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                  lp+G+rF+P+d el v++L kk+ g ++++ +v +e+ di++++P+dLp   +++e++wyf++k+ k++      +r+ +   W  tg++++vl+   
  AT5G41090.1   8 LPVGMRFRPSDLELAVYFLIKKALGLPMKALTVPDECnDIFSTHPRDLP--GYGSEEHWYFYCKKPKNQV-----TRTKSYNLWIPTGEKTDVLDPkk 98 
                  799***************************99999999***********..345789*******999764.....45555568***********9877 PP

          NAM  96 .kgelvglkktLvfy...........kgrapkgektdWvmheyrl 128
                   +gelvg+k++++f            +g+++++ +++W+++e +l
  AT5G41090.1  99 nGGELVGIKHSFTFIeneeeeesdnkNGDEEEPPQCNWFLDEISL 143
                  77888**********77776666655588888889****999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-306160IPR003441NAC domain
PROSITE profilePS5100529.6258160IPR003441NAC domain
PfamPF023654.0E-119142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGPTYRALPV GMRFRPSDLE LAVYFLIKKA LGLPMKALTV PDECNDIFST HPRDLPGYGS  60
EEHWYFYCKK PKNQVTRTKS YNLWIPTGEK TDVLDPKKNG GELVGIKHSF TFIENEEEEE  120
SDNKNGDEEE PPQCNWFLDE ISLPLTVVDT DWTLCHIFYE KVKPEFGNLH IVESESESEE  180
EEEDESVDKP AESLDSVKEK DGTVLPPPPA TP
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184220590.0
Genevisible249338_at0.0
Expression AtlasAT5G41090-
AtGenExpressAT5G41090-
ATTED-IIAT5G41090-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G41090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G41090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0300860.0BT030086.1 Arabidopsis thaliana At5g41090 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198925.11e-155NAC domain containing protein 95
TrEMBLQ9FLM01e-155Q9FLM0_ARATH; At5g41090
STRINGAT5G41090.11e-155(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Yu HJ,Hogan P,Sundaresan V
    Analysis of the female gametophyte transcriptome of Arabidopsis by comparative expression profiling.
    Plant Physiol., 2005. 139(4): p. 1853-69
    [PMID:16299181]
  4. Steffen JG,Kang IH,Macfarlane J,Drews GN
    Identification of genes expressed in the Arabidopsis female gametophyte.
    Plant J., 2007. 51(2): p. 281-92
    [PMID:17559508]
  5. Reňák D,Dupl'áková N,Honys D
    Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis.
    Sex. Plant Reprod., 2012. 25(1): p. 39-60
    [PMID:22101548]