PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G41030.1
Common NameMEE6.10, TCP6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 243aa    MW: 27618 Da    PI: 6.5206
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G41030.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.95.5e-32632403124
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.............seceaesssssasnsss 87 
                   kk++++++h kv+gR+RRvRl+ +caar+++L++eLG+++d++t+eWLlq a+p+i  +t ++ ++              + c ++++ s ++ + +
  AT5G41030.1  63 EKKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSATVNGIKPTesvvsqppltadlMICHSVEEASRTQMEAN 160
                  69*************************************************************55555333333334444444444444444443333 PP

          TCP  88 g..........................................kaaksaa.kskksqksaasalnlakesrakararare 124
                  g                                           ++     ++ ++q  +++++ l+++s++++++ a+e
  AT5G41030.1 161 GlwrnetgqtiggfdlnygigfdfngvpeigfgdnqtpglelrLSQVGVLnPQVFQQMGKEQFRVLHHHSHEDQQQSAEE 240
                  35666666677788888888888888888888888888888884444444477777778888888888888888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136924.7468122IPR017887Transcription factor TCP subgroup
PfamPF036343.8E-2468130IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE EEDQEIQILY  60
EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG HKSDGETLEW LLQHAEPSIL  120
SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI  180
GFDFNGVPEI GFGDNQTPGL ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE  240
NGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12646KRKQTEVKGFDIVVGEKRKKK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT5G41030
AtGenExpressAT5G41030
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G41030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G41030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198919.10.0TCP family transcription factor
SwissprotQ9FLM60.0TCP6_ARATH; Transcription factor TCP6
TrEMBLA0A178U8B21e-177A0A178U8B2_ARATH; Uncharacterized protein
STRINGAT5G41030.11e-180(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Representative plantOGRP9221459
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Aguilar-Martínez JA,Poza-Carrión C,Cubas P
    Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds.
    Plant Cell, 2007. 19(2): p. 458-72
    [PMID:17307924]
  3. Chen GH,Sun JY,Liu M,Liu J,Yang WC
    SPOROCYTELESS is a novel embryophyte-specific transcription repressor that interacts with TPL and TCP proteins in Arabidopsis.
    J Genet Genomics, 2014. 41(12): p. 617-25
    [PMID:25527103]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]