PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G38620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 349aa    MW: 38849 Da    PI: 4.1646
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G38620.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.11.1e-082051940
                 HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviif 40
                   vt +kRr+g+  KA+ L+ L da++a++  
  AT5G38620.1 20 LRVTCTKRRKGLYSKASQLCLLSDAQIAILAT 51
                 579*************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.035449IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-8467IPR002100Transcription factor, MADS-box
CDDcd002665.22E-23584No hitNo description
SuperFamilySSF554552.22E-13677IPR002100Transcription factor, MADS-box
PfamPF003196.3E-101454IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS  60
FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL TRKNLGLGFW WNDESLVRSE  120
NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC  180
CIPENLNDIT QEPNQTLDIQ SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN  240
NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV  300
DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184217770.0
Expression AtlasAT5G38620-
AtGenExpressAT5G38620-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G38620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G38740, AT5G40220, AT5G65330
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G38620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAY1412370.0AY141237.1 Arabidopsis thaliana MADS-box protein AGL73 mRNA, complete cds.
GenBankAB0052310.0AB005231.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBB18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198678.10.0MADS-box protein AGL73
SwissprotQ9C6332e-45AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLQ9FFV90.0Q9FFV9_ARATH; MADS-box protein AGL73
STRINGAT5G38620.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Representative plantOGRP1084328
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  4. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  5. Zhang Y,Wu Y,Liu Y,Han B
    Computational identification of 69 retroposons in Arabidopsis.
    Plant Physiol., 2005. 138(2): p. 935-48
    [PMID:15923328]
  6. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]