PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G27810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13848.8 Da    PI: 5.7068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G27810.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.49e-091282148
                 HHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF 21 lKKAeELSvLCdaevaviifsstgklye 48
                 +KK +ELS+LC++  + ii+s+ ++ +e
  AT5G27810.1  1 MKKVHELSTLCGITSCAIIYSPYDTSHE 28
                 8********************9877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002667.60E-18157No hitNo description
SuperFamilySSF554551.29E-12167IPR002100Transcription factor, MADS-box
PfamPF003195.1E-6125IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MKKVHELSTL CGITSCAIIY SPYDTSHEVW PSNSGVQRVV SEFRTLPEMD QHKKMVDQEG  60
FLKQRIAKPT ENLRRQRKDN KELEMTEVMF RCLIGNMEML KSESQSESTT MVYENDEPS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184211590.0
Genevisible246740_at1e-176
Expression AtlasAT5G27810-
AtGenExpressAT5G27810-
ATTED-IIAT5G27810-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G27810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G27810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0695560.0AC069556.4 Genomic Sequence For Arabidopsis thaliana Clone T1G16 From Chromosome V, complete sequence.
GenBankBT0300700.0BT030070.1 Arabidopsis thaliana At5g27810 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198133.12e-85MADS-box transcription factor family protein
SwissprotQ9FJK32e-61AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLQ3E8Z94e-84Q3E8Z9_ARATH; At5g27810
STRINGAT5G27810.17e-85(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Publications ? help Back to Top
  1. Adai A, et al.
    Computational prediction of miRNAs in Arabidopsis thaliana.
    Genome Res., 2005. 15(1): p. 78-91
    [PMID:15632092]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]