PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G27070.1
Common NameAGL53, F15P11.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 287aa    MW: 32684.1 Da    PI: 8.6045
Description AGAMOUS-like 53
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G27070.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.39.5e-192776250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                 +++++ ++++ +s R ++++KKA ELS+LC+++v+vi+++ +gkl ++++
  AT5G27070.1 27 SSSSTAKKTTNLSMREQTMFKKALELSTLCNIDVCVIYYGRDGKLiKTWP 76
                 57888899999*********************************856786 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-14677IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.123078IPR002100Transcription factor, MADS-box
PfamPF003192.0E-123071IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-1432112IPR002100Transcription factor, MADS-box
CDDcd002664.00E-2235103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0020090anatomyembryo sac central cell
PO:0020093anatomyantipodal cell
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV  60
CVIYYGRDGK LIKTWPEDQS KVRDMAERFS RLHERERCKK RTNLSLFLRK KILDDTKLSE  120
KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW  180
TEPLMSGVSN TEQDLSTSSL SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS  240
GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible246851_at4e-66
Expression AtlasAT5G27070-
AtGenExpressAT5G27070-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G27070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G38620, AT5G49420, AT5G49490, AT1G46408
IntActSearch Q7X9N2
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G27070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412170.0AY141217.1 Arabidopsis thaliana MADS-box protein AGL53 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF15P110.0AF160760.1 Arabidopsis thaliana BAC F15P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198059.10.0AGAMOUS-like 53
SwissprotQ7X9N20.0AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLA0A178U9H70.0A0A178U9H7_ARATH; Uncharacterized protein
STRINGAT5G27070.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Representative plantOGRP6766218
Publications ? help Back to Top
  1. Sessions A, et al.
    A high-throughput Arabidopsis reverse genetics system.
    Plant Cell, 2002. 14(12): p. 2985-94
    [PMID:12468722]
  2. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  3. Parenicov√° L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  4. N
    Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry.
    Mol. Cell Proteomics, 2003. 2(11): p. 1234-43
    [PMID:14506206]
  5. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  6. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  7. Popescu SC, et al.
    Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays.
    Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5
    [PMID:17360592]
  8. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  9. Li HJ, et al.
    Arabidopsis CBP1 Is a Novel Regulator of Transcription Initiation in Central Cell-Mediated Pollen Tube Guidance.
    Plant Cell, 2015. 27(10): p. 2880-93
    [PMID:26462908]
  10. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]