PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G24110.1
Common NameATWRKY30, MLE8.3, MZF18.18, WRKY30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 303aa    MW: 33985.3 Da    PI: 6.5735
Description WRKY DNA-binding protein 30
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G24110.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.9e-27112173159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+rs+e++ ++ei Y+g H ++
  AT5G24110.1 112 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSDENQMLLEISYRGIHSCS 173
                  59***************************98889*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.023107171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-25110174IPR003657WRKY domain
SuperFamilySSF1182901.24E-23111174IPR003657WRKY domain
SMARTSM007741.1E-38112174IPR003657WRKY domain
PfamPF031065.3E-25113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009029anatomystamen
PO:0009047anatomystem
PO:0025034anatomyleaf
PO:0001054developmental stagevascular leaf senescent stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEKNHSSGEW EKMKNEINEL MIEGRDYAHQ FGSASSQETR EHLAKKILQS YHKSLTIMNY  60
SGELDQVSQG GGSPKSDDSD QEPLVIKSSK KSMPRWSSKV RIAPGAGVDR TLDDGFSWRK  120
YGQKDILGAK FPRGYYRCTY RKSQGCEATK QVQRSDENQM LLEISYRGIH SCSQAANVGT  180
TMPIQNLEPN QTQEHGNLDM VKESVDNYNH QAHLHHNLHY PLSSTPNLEN NNAYMLQMRD  240
QNIEYFGSTS FSSDLGTSIN YNFPASGSAS HSASNSPSTV PLESPFESYD PNHPYGGFGG  300
FYS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.91770.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306892790.0
Genevisible249770_at0.0
Expression AtlasAT5G24110-
AtGenExpressAT5G24110-
ATTED-IIAT5G24110-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group III
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. results presented here show that AtWRKY30 is responsive to several stress conditions either from abiotic or biotic origin, suggesting that AtWRKY30 could have a role in the activation of defence responses at early stages of Arabidopsis growth
    [PMID: 23794142]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G24110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G24110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0052950.0BT005295.1 Arabidopsis thaliana At5g24110 mRNA, complete cds.
GenBankAK1178850.0AK117885.1 Arabidopsis thaliana At5g24110 mRNA for unknown protein, complete cds, clone: RAFL19-06-C08.
GenBankAF4048580.0AF404858.1 Arabidopsis thaliana WRKY transcription factor 30 (WRKY30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568439.10.0WRKY DNA-binding protein 30
SwissprotQ9FL620.0WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLD7M2H20.0D7M2H2_ARALL; Putative uncharacterized protein
STRINGAT5G24110.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Representative plantOGRP1417875
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  4. de Torres M,Sanchez P,Fernandez-Delmond I,Grant M
    Expression profiling of the host response to bacterial infection: the transition from basal to induced defence responses in RPM1-mediated resistance.
    Plant J., 2003. 33(4): p. 665-76
    [PMID:12609040]
  5. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  6. Vanderauwera S, et al.
    Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis.
    Plant Physiol., 2005. 139(2): p. 806-21
    [PMID:16183842]
  7. Taki N, et al.
    12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis.
    Plant Physiol., 2005. 139(3): p. 1268-83
    [PMID:16258017]
  8. Ma S,Gong Q,Bohnert HJ
    Dissecting salt stress pathways.
    J. Exp. Bot., 2006. 57(5): p. 1097-107
    [PMID:16510518]
  9. Tosti N, et al.
    Gene expression profiles of O3-treated Arabidopsis plants.
    Plant Cell Environ., 2006. 29(9): p. 1686-702
    [PMID:16913859]
  10. Michel K,Abderhalden O,Bruggmann R,Dudler R
    Transcriptional changes in powdery mildew infected wheat and Arabidopsis leaves undergoing syringolin-triggered hypersensitive cell death at infection sites.
    Plant Mol. Biol., 2006. 62(4-5): p. 561-78
    [PMID:16941219]
  11. Qutob D, et al.
    Phytotoxicity and innate immune responses induced by Nep1-like proteins.
    Plant Cell, 2006. 18(12): p. 3721-44
    [PMID:17194768]
  12. Ko JH,Yang SH,Park AH,Lerouxel O,Han KH
    ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana.
    Plant J., 2007. 50(6): p. 1035-48
    [PMID:17565617]
  13. Brown BA,Jenkins GI
    UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH.
    Plant Physiol., 2008. 146(2): p. 576-88
    [PMID:18055587]
  14. Scarpeci TE,Zanor MI,Carrillo N,Mueller-Roeber B,Valle EM
    Generation of superoxide anion in chloroplasts of Arabidopsis thaliana during active photosynthesis: a focus on rapidly induced genes.
    Plant Mol. Biol., 2008. 66(4): p. 361-78
    [PMID:18158584]
  15. Gandia-Herrero F, et al.
    Detoxification of the explosive 2,4,6-trinitrotoluene in Arabidopsis: discovery of bifunctional O- and C-glucosyltransferases.
    Plant J., 2008. 56(6): p. 963-74
    [PMID:18702669]
  16. Inz
    A subcellular localization compendium of hydrogen peroxide-induced proteins.
    Plant Cell Environ., 2012. 35(2): p. 308-20
    [PMID:21443605]
  17. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  18. Besseau S,Li J,Palva ET
    WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana.
    J. Exp. Bot., 2012. 63(7): p. 2667-79
    [PMID:22268143]
  19. Koyama T, et al.
    A regulatory cascade involving class II ETHYLENE RESPONSE FACTOR transcriptional repressors operates in the progression of leaf senescence.
    Plant Physiol., 2013. 162(2): p. 991-1005
    [PMID:23629833]
  20. Scarpeci TE,Zanor MI,Mueller-Roeber B,Valle EM
    Overexpression of AtWRKY30 enhances abiotic stress tolerance during early growth stages in Arabidopsis thaliana.
    Plant Mol. Biol., 2013. 83(3): p. 265-77
    [PMID:23794142]