PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G23090.3
Common NameNF-YB13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YB
Protein Properties Length: 146aa    MW: 16487.3 Da    PI: 4.3659
Description nuclear factor Y, subunit B13
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G23090.3genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB61.61.8e-1915892092
        NF-YB 20 vlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkkyre 92
                  lP++ ++++da++++ ec +efi +v+se++d c++e+++ti+++ +l al  lGf +y+e++ + y  +ky  
  AT5G23090.3 15 SLPKDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAaYeQHKYET 89
                 69************************************************************9865141345544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-3115126IPR009072Histone-fold
SuperFamilySSF471131.12E-2716129IPR009072Histone-fold
PfamPF008083.0E-151766IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKDV RVARDAQDLL IECCVEFINL VSSESNDVCN KEDKRTIAPE  60
HVLKALQVLG FGEYIEEVYA AYEQHKYETM QDTQRSVKWN PGAQMTEEEA AAEQQRMFAE  120
ARARMNGGVS VPQPEHPETD QRSPQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B6e-281512228133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.2700.0flower| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible249878_at0.0
Expression AtlasAT5G23090-
AtGenExpressAT5G23090-
ATTED-IIAT5G23090-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G23090.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G23090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174600.0AK317460.1 Arabidopsis thaliana AT5G23090 mRNA, complete cds, clone: RAFL23-07-M17.
GenBankATHDR1B0.0D38110.1 Arabidopsis thaliana mRNA for Dr1, complete cds.
GenBankAY0577090.0AY057709.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
GenBankAY1169600.0AY116960.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197700.21e-106nuclear factor Y, subunit B13
SwissprotP495921e-104NC2B_ARATH; Protein Dr1 homolog
TrEMBLF4KBG11e-105F4KBG1_ARATH; Nuclear factor Y, subunit B13
STRINGAT5G23090.21e-102(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Kersten B, et al.
    Generation of Arabidopsis protein chips for antibody and serum screening.
    Plant Mol. Biol., 2003. 52(5): p. 999-1010
    [PMID:14558660]
  3. Bae MS,Cho EJ,Choi EY,Park OK
    Analysis of the Arabidopsis nuclear proteome and its response to cold stress.
    Plant J., 2003. 36(5): p. 652-63
    [PMID:14617066]
  4. Kang JG,Pyo YJ,Cho JW,Cho MH
    Comparative proteome analysis of differentially expressed proteins induced by K+ deficiency in Arabidopsis thaliana.
    Proteomics, 2004. 4(11): p. 3549-59
    [PMID:15449379]
  5. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  6. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]