PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G21960.1
Common NameERF016, T6G21.22
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 216aa    MW: 24400.5 Da    PI: 4.3814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G21960.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-19555155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g
  AT5G21960.1  5 PKYTGVRKRK-WGKWVAEIRLPNS---RDRIWLGSFDSAEKAARAFDAALYCLRG 55
                 79*****999.**********933...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-12555IPR001471AP2/ERF domain
CDDcd000186.87E-29565No hitNo description
SMARTSM003806.0E-31669IPR001471AP2/ERF domain
PROSITE profilePS5103221.68663IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-29664IPR001471AP2/ERF domain
PRINTSPR003673.7E-9718IPR001471AP2/ERF domain
PRINTSPR003673.7E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDASPKYTGV RKRKWGKWVA EIRLPNSRDR IWLGSFDSAE KAARAFDAAL YCLRGPGARF  60
NFPDNPPEIP GGRSLTPQQI QVVASRFACE EELLPPEQHH PSPPRGDHNT EEEVIISARG  120
EINSGSGGPT LGQVGEDNNN EGNSNDTSSY WPLIWEEENF VGPPNSDHEF GFFTDDSTNL  180
YFPTQQQQQH QLSSDFYYDG ACEDDFSHYN INLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-156631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.456360.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453611520.0
Expression AtlasAT5G21960-
AtGenExpressAT5G21960-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G21960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G21960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409770.0AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAL5898830.0AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project).
GenBankAY5608660.0AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds.
GenBankBT0115770.0BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds.
GenBankBT0122430.0BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_680184.11e-161Integrase-type DNA-binding superfamily protein
SwissprotQ9C5911e-162ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A178UUL31e-160A0A178UUL3_ARATH; Uncharacterized protein
STRINGAT5G21960.11e-161(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Bae MS,Cho EJ,Choi EY,Park OK
    Analysis of the Arabidopsis nuclear proteome and its response to cold stress.
    Plant J., 2003. 36(5): p. 652-63
    [PMID:14617066]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  3. Cartagena JA, et al.
    The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen.
    Dev. Biol., 2008. 315(2): p. 355-68
    [PMID:18252252]
  4. Gong W, et al.
    The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors.
    Mol Plant, 2008. 1(1): p. 27-41
    [PMID:19802365]
  5. Elrouby N,Coupland G
    Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(40): p. 17415-20
    [PMID:20855607]