PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G19790.1
Common NameERF002, RAP2-11, RAP2.11, T29J13.210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 253aa    MW: 28374.7 Da    PI: 7.687
Description related to AP2 11
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G19790.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182070155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  AT5G19790.1 20 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 70
                 699*******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-332080No hitNo description
PfamPF008475.2E-132070IPR001471AP2/ERF domain
PROSITE profilePS5103219.8232178IPR001471AP2/ERF domain
SMARTSM003807.0E-392184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-282179IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-192178IPR016177DNA-binding domain
PRINTSPR003674.1E-82233IPR001471AP2/ERF domain
PRINTSPR003674.1E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009873Biological Processethylene-activated signaling pathway
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000256anatomyroot hair cell
PO:0000293anatomyguard cell
PO:0003015anatomyprimary root differentiation zone
PO:0005679anatomyepidermis
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA  60
YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS MKQQQQQQHK PVSSLTDCNI  120
NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL  180
AQAGGETHGH LNDHYSTDQH LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI  240
WDLPSLSQLF CPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-152277359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO22816460.0
Genevisible245966_at0.0
Expression AtlasAT5G19790-
AtGenExpressAT5G19790-
ATTED-IIAT5G19790-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. RAP2.11 regulates AtHAK5 expression under low-K+ conditions.
    [PMID: 22406475]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G19790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G19790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031040.0AF003104.1 Arabidopsis thaliana AP2 domain containing protein RAP2.11 mRNA, partial cds.
GenBankAY5608540.0AY560854.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g19790) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT29J130.0AF296838.1 Arabidopsis thaliana BAC T29J13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197480.10.0related to AP2 11
SwissprotQ6J9S10.0RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A178UQ221e-162A0A178UQ22_ARATH; RAP2.11
STRINGAT5G19790.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
    Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.
    Plant J., 2004. 38(2): p. 366-79
    [PMID:15078338]
  3. Tai HH,Tai GC,Beardmore T
    Dynamic histone acetylation of late embryonic genes during seed germination.
    Plant Mol. Biol., 2005. 59(6): p. 909-25
    [PMID:16307366]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Lee JY, et al.
    Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(15): p. 6055-60
    [PMID:16581911]
  6. Jung J, et al.
    The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis.
    Planta, 2007. 225(3): p. 575-88
    [PMID:16937017]
  7. Ma S,Bohnert HJ
    Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression.
    Genome Biol., 2007. 8(4): p. R49
    [PMID:17408486]
  8. VerniƩ T, et al.
    EFD Is an ERF transcription factor involved in the control of nodule number and differentiation in Medicago truncatula.
    Plant Cell, 2008. 20(10): p. 2696-713
    [PMID:18978033]
  9. Gong W, et al.
    The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors.
    Mol Plant, 2008. 1(1): p. 27-41
    [PMID:19802365]
  10. An D,Yang J,Zhang P
    Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress.
    BMC Genomics, 2012. 13: p. 64
    [PMID:22321773]
  11. Kim MJ,Ruzicka D,Shin R,Schachtman DP
    The Arabidopsis AP2/ERF transcription factor RAP2.11 modulates plant response to low-potassium conditions.
    Mol Plant, 2012. 5(5): p. 1042-57
    [PMID:22406475]
  12. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  13. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]
  14. Okamuro JK,Caster B,Villarroel R,Van Montagu M,Jofuku KD
    The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(13): p. 7076-81
    [PMID:9192694]