PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G18090.1
Common NameMRG7.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 301aa    MW: 34674.7 Da    PI: 9.0534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G18090.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.4e-1818109196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ffk+l ++d +++ +  +p +f++++++ +e s ++ l+ ++g sW +k+  +++++  ++ +kGW +F ++ngL   +f++F+++g+++f  +v +
  AT5G18090.1  18 FFKILRSADLSSEIMRGIPLNFIKSISE-EELSAKMLLKVSWGSSWPIKI--CRNPSFyFMEKKGWDQFLSDNGLGNDEFLTFTHQGNMCF--TVDI 109
                  99***99999999999*******99964.57999****************..999999556669**************************9..6666 PP

2B3413.4e-132232991596
                  -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   l +pk f e h+  ++e ++ ++ d++g rsW+v +++++++ r  + +GW + +k+ gL+ gD+++F+l++   +e++v+v
  AT5G18090.1 223 FLGIPKMFEELHM--PTEATMFKIHDPEGkRSWDVMYKFSNNQTR--FCAGWIRLAKELGLEIGDVCTFTLIK--PTEMLVRV 299
                  4679999987776..456779*****99889******88888877..668********************987..56667776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-1811112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1814116IPR015300DNA-binding pseudobarrel domain
CDDcd100176.46E-1716110No hitNo description
SMARTSM010194.4E-2218113IPR003340B3 DNA binding domain
PROSITE profilePS5086312.60518113IPR003340B3 DNA binding domain
PfamPF023622.3E-1618110IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-19209299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.351209301IPR003340B3 DNA binding domain
CDDcd100179.83E-16210297No hitNo description
Gene3DG3DSA:2.40.330.104.8E-17210299IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-13212300IPR003340B3 DNA binding domain
PfamPF023625.1E-10223297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020003anatomyplant ovule
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKNKAFGQIM DDAENPGFFK ILRSADLSSE IMRGIPLNFI KSISEEELSA KMLLKVSWGS  60
SWPIKICRNP SFYFMEKKGW DQFLSDNGLG NDEFLTFTHQ GNMCFTVDIY QIDGKELLTP  120
RRSATIASSS GRNKREQRNN IYKDVKEEED IESWSESSYP GHKTAESTGR RQRLSLSNKK  180
AKETEKSKKK KMKVESISYD SQDDSLSLVP EFTLTIKKSY LIFLGIPKMF EELHMPTEAT  240
MFKIHDPEGK RSWDVMYKFS NNQTRFCAGW IRLAKELGLE IGDVCTFTLI KPTEMLVRVS  300
K
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453581600.0
Genevisible250026_at0.0
Expression AtlasAT5G18090-
AtGenExpressAT5G18090-
ATTED-IIAT5G18090-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G18090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G18090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0055530.0BT005553.1 Arabidopsis thaliana clone U20966 unknown protein (At5g18090) mRNA, complete cds.
GenBankBT0040990.0BT004099.1 Arabidopsis thaliana clone RAFL15-45-L21 (R20966) unknown protein (At5g18090) mRNA, complete cds.
GenBankAY0878530.0AY087853.1 Arabidopsis thaliana clone 38961 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197310.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9FK610.0Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLD7LXR41e-174D7LXR4_ARALL; Transcriptional factor B3 family protein
STRINGAT5G18090.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Kamauchi S,Nakatani H,Nakano C,Urade R
    Gene expression in response to endoplasmic reticulum stress in Arabidopsis thaliana.
    FEBS J., 2005. 272(13): p. 3461-76
    [PMID:15978049]
  3. Ohr H,Bui AQ,Le BH,Fischer RL,Choi Y
    Identification of putative Arabidopsis DEMETER target genes by GeneChip analysis.
    Biochem. Biophys. Res. Commun., 2007. 364(4): p. 856-60
    [PMID:17964287]
  4. Yang TJ,Perry PJ,Ciani S,Pandian S,Schmidt W
    Manganese deficiency alters the patterning and development of root hairs in Arabidopsis.
    J. Exp. Bot., 2008. 59(12): p. 3453-64
    [PMID:18772308]
  5. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  6. Skinner DJ,Gasser CS
    Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants.
    BMC Plant Biol., 2009. 9: p. 29
    [PMID:19291320]