PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G18037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 71aa    MW: 8757.9 Da    PI: 5.6253
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G18037.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.12e-111362351
          NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkv 51
                 +Gf FhP+ +el+ +y+ +kv++++++++e  +++diy  ePw+L  +++
  AT5G18037.1 13 VGFWFHPSAQELIIRYIGPKVTKRSNKEFELEDKFDIYAKEPWRLShTET 62
                 7************************9999988999**********82222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-10971IPR003441NAC domain
PROSITE profilePS5100514.2491171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MSMVKYYDKE EHVGFWFHPS AQELIIRYIG PKVTKRSNKE FELEDKFDIY AKEPWRLSHT  60
ETNFLEPNEW F
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT5G18037
AtGenExpressAT5G18037
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G18037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G18037
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026881e-117CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0154731e-117AB015473.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCM23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001119244.12e-47NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLB3H7D82e-47B3H7D8_ARATH; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
STRINGAT5G18037.16e-47(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821