PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G15060.1
Common NameASL42, F2G14, LBD34
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 141aa    MW: 15781.9 Da    PI: 9.637
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G15060.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.82e-2917114196
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                  +CaaC+++rr+C++dC+++pyfpae++++f+n+h+l+++++++k lk+l  ++ee+++amss++ye+++r + P  +++ + +    + +++++ l++
  AT5G15060.1  17 QCAACRHQRRRCTPDCFFRPYFPAERHQEFQNFHRLHSNTRLQKKLKELglSPEEQREAMSSIIYESNIRSQFPGPSVAVTNTFSIFEPKSHSSPLNY 114
                  6***********************************************988999********************999998888888888877777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0216119IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-251790IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003674Molecular Functionmolecular_function
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MTLQGSSGVN NGGYVNQCAA CRHQRRRCTP DCFFRPYFPA ERHQEFQNFH RLHSNTRLQK  60
KLKELGLSPE EQREAMSSII YESNIRSQFP GPSVAVTNTF SIFEPKSHSS PLNYVAPVIK  120
SPPLSSIPPP PASLIPPLTT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-14181081298LOB family transfactor Ramosa2.1
5ly0_B1e-14181081298LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1865229910.0
Genevisible246543_at1e-103
Expression AtlasAT5G15060-
AtGenExpressAT5G15060-
ATTED-IIAT5G15060-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G15060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G15060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3911460.0AL391146.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197010.21e-100Lateral organ boundaries (LOB) domain family protein
SwissprotP594691e-101LBD34_ARATH; LOB domain-containing protein 34
STRINGAT5G15060.11e-99(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Publications ? help Back to Top
  1. Shuai B,Reynaga-Peña CG,Springer PS
    The lateral organ boundaries gene defines a novel, plant-specific gene family.
    Plant Physiol., 2002. 129(2): p. 747-61
    [PMID:12068116]
  2. Libeau P, et al.
    Gene expression profiling of Arabidopsis meiocytes.
    Plant Biol (Stuttg), 2011. 13(5): p. 784-93
    [PMID:21815983]