PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G12850.1
Common NameT24H18.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 706aa    MW: 77775.3 Da    PI: 6.9463
Description CCCH-type zinc finger protein with ARM repeat domain
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G12850.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-06302322526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f + G Ck Gd C +aHg
  AT5G12850.1 302 PCPDFKK-GSCKQGDMCEYAHG 322
                  8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-1640184IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.58E-1642176IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.01683176IPR020683Ankyrin repeat-containing domain
PfamPF127965.7E-1083152IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1783113IPR002110Ankyrin repeat
CDDcd002044.81E-1485161No hitNo description
PROSITE profilePS5008811.461118153IPR002110Ankyrin repeat
SMARTSM002485.8E-5118150IPR002110Ankyrin repeat
SMARTSM003561.2E-4297323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915302324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4330360IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.831332356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MCGLAKKLDI EDTLTSLSDQ ENESLAKPMN DAAEWEHSFS ALLEFAADND VEGFRRQLSD  60
VSCINQMGLW YRRQRFVRRM VLEQRTPLMV ASLYGSLDVV KFILSFPEAE LNLSCGPDKS  120
TALHCAASGA SVNSLDVVKL LLSVGADPNI PDAHGNRPVD VLVVSPHAPG LRTILEEILK  180
KDEIISEDLH ASSSSLGSSF RSLSSSPDNG SSLLSLDSVS SPTKPHGTDV TFASEKKEYP  240
IDPSLPDIKS GIYSTDEFRM FSFKIRPCSR AYSHDWTECP FAHPGENARR RDPRKFHYTC  300
VPCPDFKKGS CKQGDMCEYA HGVFECWLHP AQYRTRLCKD GMGCNRRVCF FAHANEELRP  360
LYPSTGSGLP SPRASSAVSA STMDMASVLN MLPGSPSAAQ HSFTPPISPS GNGSMPHSSM  420
GWPQQNIPAL NLPGSNIQLS RLRSSLNARD IPSEQLSMLH EFEMQRQLAG DMHSPRFMNH  480
SARPKTLNPS NLEELFSAEV ASPRFSDQLA VSSVLSPSHK SALLNQLQNN KQSMLSPIKT  540
NLMSSPKNVE QHSLLQQASS PRGGEPISPM NARMKQQLHS RSLSSRDFGS SLPRDLMPTD  600
SGSPLSPWSS WDQTHGSKVD WSVQSDELGR LRKSHSLANN PNREADVSWA QQMLKDSSSP  660
RNGNRVVNMN GARPLTQGGS SVNPHNSDTR ESDILDAWLE QLHLDR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.52810.0flower| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453579450.0
Genevisible250321_at0.0
Expression AtlasAT5G12850-
AtGenExpressAT5G12850-
ATTED-IIAT5G12850-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G12850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G12850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2271450.0AK227145.1 Arabidopsis thaliana mRNA for zinc finger transcription factor -like protein, complete cds, clone: RAFL09-83-N23.
GenBankAL3530130.0AL353013.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196789.10.0CCCH-type zinc finger protein with ARM repeat domain-containing protein
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A178UHK20.0A0A178UHK2_ARATH; Uncharacterized protein
STRINGAT5G12850.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Representative plantOGRP7091569
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Koroleva OA,Tomlinson ML,Leader D,Shaw P,Doonan JH
    High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions.
    Plant J., 2005. 41(1): p. 162-74
    [PMID:15610358]
  4. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  5. Filatov V, et al.
    Comparison of gene expression in segregating families identifies genes and genomic regions involved in a novel adaptation, zinc hyperaccumulation.
    Mol. Ecol., 2006. 15(10): p. 3045-59
    [PMID:16911220]
  6. Sun J, et al.
    The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis.
    Plant Cell Physiol., 2007. 48(8): p. 1148-58
    [PMID:17609218]
  7. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]