PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G10970.1
Common NameT30N20_240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 272aa    MW: 30188.6 Da    PI: 6.1721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G10970.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.6e-05104126123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C ++F ++  L  H++ H
  AT5G10970.1 104 FSCNYCQRTFYSSQALGGHQNAH 126
                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.38E-799131No hitNo description
Gene3DG3DSA:3.30.160.608.5E-4102130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009025anatomyvascular leaf
PO:0020100anatomyhypocotyl
PO:0007115developmental stageLP.04 four leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD QKEGVEGIKL  60
DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE QKLFSCNYCQ RTFYSSQALG  120
GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN  180
VYGGEYGQIN WSRIPLVQQP AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV  240
EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184164250.0
Genevisible250396_at0.0
Expression AtlasAT5G10970-
AtGenExpressAT5G10970-
ATTED-IIAT5G10970-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G10970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G10970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAL3912220.0AL391222.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project).
GenBankAL3652340.0AL365234.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196658.10.0C2H2 and C2HC zinc finger-containing protein
SwissprotQ392623e-78ZFP3_ARATH; Zinc finger protein 3
TrEMBLQ9LEU30.0Q9LEU3_ARATH; C2H2 and C2HC zinc finger-containing protein
STRINGAT5G10970.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
MalvidsOGEM18932771
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Lee DJ, et al.
    Genome-wide expression profiling of ARABIDOPSIS RESPONSE REGULATOR 7(ARR7) overexpression in cytokinin response.
    Mol. Genet. Genomics, 2007. 277(2): p. 115-37
    [PMID:17061125]