PlantTFDB
Plant Transcription Factor Database
v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G09780.1
Common NameF17I14.30, REM23
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 308aa    MW: 35622.8 Da    PI: 10.3886
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G09780.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.63.6e-2119113199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkvl++sd+++++   +p +f+ +++ + e s +++++ ++g+sW+vk+  +k+++  ++ ++GW++Fv +n L + +f++F+++g+++f  +vk+f
  AT5G09780.1  19 FFKVLKRSDMSSEDTRAIPYDFVINFSDN-ELSGDMKFRVQWGNSWKVKI--SKNPRFyFMEKSGWEKFVIDNALGDHEFLTFTHKGQMSF--TVKIF 111
                  99*********************888766.5777****************..******555569*********************999999..9*999 PP

                  -S CS
           B3  98 rk 99 
                  +k
  AT5G09780.1 112 NK 113
                  87 PP
2B339.79e-13220297386
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  k+++++++ ks  l +pk+f  +++ k  e++ +++ +++g ++W+v +    k ++ ++++GWk+ +k+  +  gD++ F+l+ 
  AT5G09780.1 220 KIFISKSYIKS--LAIPKPFG-NYMPK--EKTRVKIHHPDGeKTWKVVF--VVKERGQIFSGGWKRLCKEYPVVFGDTCKFTLIT 297
                  66666666665..89*****9.66533..4457*******99*******..777777899**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2014115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2115120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-2018112No hitNo description
PROSITE profilePS5086313.3119114IPR003340B3 DNA binding domain
PfamPF023625.9E-2019113IPR003340B3 DNA binding domain
SMARTSM010195.8E-2519114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-14213305IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.869216308IPR003340B3 DNA binding domain
CDDcd100175.77E-7219296No hitNo description
SMARTSM010191.0E-14219308IPR003340B3 DNA binding domain
PfamPF023621.9E-10220297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-11223302IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009046anatomyflower
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MASNPDFLWC KEERKQESFF KVLKRSDMSS EDTRAIPYDF VINFSDNELS GDMKFRVQWG  60
NSWKVKISKN PRFYFMEKSG WEKFVIDNAL GDHEFLTFTH KGQMSFTVKI FNKDGKEMMQ  120
PPQSRASFAS SSRVKTEQDV KREEEVLVSS DSRSRGPTTA AETNRGGSYK RKLNFGKKKA  180
EETQTYKRTE RTQNSKRTER VVSKERVYAG EPSSSVAGFK IFISKSYIKS LAIPKPFGNY  240
MPKEKTRVKI HHPDGEKTWK VVFVVKERGQ IFSGGWKRLC KEYPVVFGDT CKFTLITPLE  300
LLLVVSKP
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184160890.0
Genevisible250491_at0.0
Expression AtlasAT5G09780-
AtGenExpressAT5G09780-
ATTED-IIAT5G09780-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G09780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G09780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566750.0DQ056675.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g09780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196540.10.0B3 domain-containing protein REM23
SwissprotQ9LXE10.0REM23_ARATH; B3 domain-containing protein REM23
TrEMBLD7M2721e-180D7M272_ARALL; Predicted protein
STRINGAT5G09780.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Publications ? help Back to Top
  1. Alves-Ferreira M, et al.
    Global expression profiling applied to the analysis of Arabidopsis stamen development.
    Plant Physiol., 2007. 145(3): p. 747-62
    [PMID:17905860]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]