PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G07500.1
Common NameAtTZF6, PEI1, T2I1.210, TZF6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 245aa    MW: 28175.4 Da    PI: 7.1842
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G07500.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-0798117626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C+ f+  G C++Gd+C FaHg
  AT5G07500.1  98 CPAFRN-GACHRGDSCEFAHG 117
                  666666.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-492118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.42792119IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-697117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-598120IPR000571Zinc finger, CCCH-type
SMARTSM0035622127150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLKSASPMAF YDIGEQQYST FGYILSKPGN AGAYEIDPSI PNIDDAIYGS DEFRMYAYKI  60
KRCPRTRSHD WTECPYAHRG EKATRRDPRR YTYCAVACPA FRNGACHRGD SCEFAHGVFE  120
YWLHPARYRT RACNAGNLCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR ARGGGNGDGV  180
TMRMDDEGYD TSRSPVRSGK DDLDSNEEKV LLKCWSRMSI VDDHYEPSDL DLDLSHFDWI  240
SELVD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.52340.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO29615410.0
Genevisible250583_at0.0
Expression AtlasAT5G07500-
AtGenExpressAT5G07500-
ATTED-IIAT5G07500-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}.
Functional Description ? help Back to Top
Source Description
TAIREncodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Function -- GeneRIF ? help Back to Top
  1. AtTZF4, 5 and 6 affect seed germination by controlling genes critical for abscisic acid (ABA) and gibberellic acid (GA) response.
    [PMID: 23421766]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G07500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G07500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0504630.0AF050463.1 Arabidopsis thaliana zinc finger transcription factor (PEI1) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAL1639120.0AL163912.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196367.10.0embryo-specific zinc finger transcription factor
SwissprotO650360.0C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLQ6V5H61e-179Q6V5H6_ARAAE; Cu2+ plastocyanin-like
STRINGAT5G07500.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP886844
MalvidsOGEM115272126
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ruuska SA,Girke T,Benning C,Ohlrogge JB
    Contrapuntal networks of gene expression during Arabidopsis seed filling.
    Plant Cell, 2002. 14(6): p. 1191-206
    [PMID:12084821]
  3. Schein M,Yang Z,Mitchell-Olds T,Schmid KJ
    Rapid evolution of a pollen-specific oleosin-like gene family from Arabidopsis thaliana and closely related species.
    Mol. Biol. Evol., 2004. 21(4): p. 659-69
    [PMID:14739246]
  4. Fiebig A,Kimport R,Preuss D
    Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification.
    Proc. Natl. Acad. Sci. U.S.A., 2004. 101(9): p. 3286-91
    [PMID:14970339]
  5. Casson S,Spencer M,Walker K,Lindsey K
    Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis.
    Plant J., 2005. 42(1): p. 111-23
    [PMID:15773857]
  6. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  7. Li Z, et al.
    A Cre/loxP-mediated self-activating gene excision system to produce marker gene free transgenic soybean plants.
    Plant Mol. Biol., 2007. 65(3): p. 329-41
    [PMID:17712602]
  8. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  9. Kim DH, et al.
    SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5.
    Plant Cell, 2008. 20(5): p. 1260-77
    [PMID:18487351]
  10. Pomeranz M,Lin PC,Finer J,Jang JC
    AtTZF gene family localizes to cytoplasmic foci.
    Plant Signal Behav, 2010. 5(2): p. 190-2
    [PMID:20173417]
  11. Bogamuwa S,Jang JC
    The Arabidopsis tandem CCCH zinc finger proteins AtTZF4, 5 and 6 are involved in light-, abscisic acid- and gibberellic acid-mediated regulation of seed germination.
    Plant Cell Environ., 2013. 36(8): p. 1507-19
    [PMID:23421766]
  12. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  13. Bogamuwa S,Jang JC
    Plant Tandem CCCH Zinc Finger Proteins Interact with ABA, Drought, and Stress Response Regulators in Processing-Bodies and Stress Granules.
    PLoS ONE, 2016. 11(3): p. e0151574
    [PMID:26978070]
  14. Li Z,Thomas TL
    PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis.
    Plant Cell, 1998. 10(3): p. 383-98
    [PMID:9501112]