PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G06770.1
Common NameMPH15.13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 240aa    MW: 25367.6 Da    PI: 10.168
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G06770.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-073861225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++Gd+C+F H
  AT5G06770.1 38 KSKPCTKFFSTSGCPFGDNCHFLH 61
                 7789******************** PP

2zf-CCCH38.81.5e-12206231127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ykt++C+++++ G C yGdrC+FaHg+
  AT5G06770.1 206 YKTKICDRYSK-GNCTYGDRCHFAHGE 231
                  9**********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.0683663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-63763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-83861IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-53861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.2E-14104183IPR004088K Homology domain, type 1
SMARTSM003221.0E-10112182IPR004087K Homology domain
PROSITE profilePS5008413.879113177IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-15114181IPR004088K Homology domain, type 1
CDDcd001058.74E-12115177No hitNo description
PfamPF000132.4E-10116178IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.6E-17200235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-9204235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.103205232IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-8205231IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9206231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL  60
HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR GDPGSGPVSI FGASTSKISV  120
DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL  180
IGRLGSVKKP QGIGGPEGKP HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.435680.0leaf| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible250647_at0.0
Expression AtlasAT5G06770-
AtGenExpressAT5G06770-
ATTED-IIAT5G06770-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G06770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9FG30
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G06770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0052600.0BT005260.1 Arabidopsis thaliana At5g06770 mRNA, complete cds.
GenBankAK1179740.0AK117974.1 Arabidopsis thaliana At5g06770 mRNA for unknown protein, complete cds, clone: RAFL19-18-C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196295.11e-176zinc finger CCCH domain-containing protein 52
SwissprotQ9FG301e-178C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLD7LZT81e-170D7LZT8_ARALL; KH domain-containing protein
STRINGAT5G06770.11e-176(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Representative plantOGRP10261756
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Lorković ZJ,Barta A
    Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana.
    Nucleic Acids Res., 2002. 30(3): p. 623-35
    [PMID:11809873]
  3. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Mockler TC, et al.
    Regulation of flowering time in Arabidopsis by K homology domain proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2004. 101(34): p. 12759-64
    [PMID:15310842]
  6. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  7. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]