PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G06500.1
Common NameAGL96
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27297.9 Da    PI: 4.7785
Description AGAMOUS-like 96
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G06500.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34e-131159350
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50
                 i +++ r  ++ +R++g++KK +ELS+LCd++++v++f  +  +l  ++
  AT5G06500.1 11 IRDDRMRRASLKRRLTGLIKKVNELSILCDMRASVVVFNREeEQLTAWP 59
                 789999********************************86514566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.292149IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-10160IPR002100Transcription factor, MADS-box
CDDcd002661.53E-24285No hitNo description
PRINTSPR004047.0E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-19394IPR002100Transcription factor, MADS-box
PfamPF003191.1E-121155IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.30.450.206.5E-41980No hitNo description
PRINTSPR004047.0E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS  60
PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK RADTRKVITE FEMDELMFQV  120
QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG  180
RSFYYVDKWV FVDPQVQNPC DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD  240
AE
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible250731_at0.0
Expression AtlasAT5G06500-
AtGenExpressAT5G06500-
ATTED-IIAT5G06500-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G06500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G48150, AT1G77980
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G06500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566720.0DQ056672.1 Arabidopsis thaliana MADS-box family protein (At5g06500) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAP0025430.0AP002543.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196268.10.0protein agamous-like 96
TrEMBLQ9FG200.0Q9FG20_ARATH; MADS-box family protein
STRINGAT5G06500.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Representative plantOGRP11413173
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  3. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  4. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  5. De Bodt S,Raes J,Van de Peer Y,Theissen G
    And then there were many: MADS goes genomic.
    Trends Plant Sci., 2003. 8(10): p. 475-83
    [PMID:14557044]
  6. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  7. Pina C,Pinto F,Feij
    Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation.
    Plant Physiol., 2005. 138(2): p. 744-56
    [PMID:15908605]
  8. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]