PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G01860.1
Common NameT20L15_130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 215aa    MW: 24052.9 Da    PI: 8.4637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G01860.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156789123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k Fs++  L  H++ H
  AT5G01860.1 67 FACTFCKKEFSTSQALGGHQNAH 89
                 78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-56393IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-66494No hitNo description
PfamPF139125.4E-66691IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6556794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MELNLSTPTS CSSSSISSSS HEAIPRTKGK TKEEVTAEPS KENQQRLEFR FLFNESSTRN  60
EAKARVFACT FCKKEFSTSQ ALGGHQNAHK QERSLAKRRK EIEINYPELS IYSQYPPSGL  120
SFSSSSSQYD LGVRYNPNIA KTTKPYPFNI FACRFGYRGG LNFPPMSHLS VPKTDDLSIN  180
LISNLEGSIH DQAVKKDQPE ADPCKDSDID LSLKL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184137700.0
Genevisible251064_at0.0
Expression AtlasAT5G01860-
AtGenExpressAT5G01860-
ATTED-IIAT5G01860-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G01860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G01860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1623510.0AL162351.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195806.11e-158C2H2 and C2HC zinc fingers superfamily protein
TrEMBLA0A178UMA11e-157A0A178UMA1_ARATH; Uncharacterized protein
TrEMBLQ9LZW01e-157Q9LZW0_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGAT5G01860.11e-158(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Representative plantOGRP8215137
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]