PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G39250.1
Common NameATRL1, RL1, RSM2, T22F8.150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 100aa    MW: 11295.5 Da    PI: 9.6329
Description RAD-like 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G39250.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-091257245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT+   + + +a + +  +   +W  +a+ +g g+t +++k ++ 
      AT4G39250.1 12 GSWTAKQNKAFEQALATYDQDtpnRWQNVAKVVG-GKTTEEVKRHYE 57
                     89*****************99*************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.107964IPR017884SANT domain
SMARTSM007171.2E-81062IPR001005SANT/Myb domain
PfamPF002493.6E-71257IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-131367IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-51366IPR009057Homeodomain-like
CDDcd001673.89E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASSSMSSQS SGSWTAKQNK AFEQALATYD QDTPNRWQNV AKVVGGKTTE EVKRHYELLV  60
QDINSIENGH VPFPNYRTSG GCTNGRLSQE EKRMRNMRLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-377100393RADIALIS
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453562011e-171
Expression AtlasAT4G39250-
AtGenExpressAT4G39250-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G39250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G39250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3752311e-165DQ375231.1 Arabidopsis thaliana AtRL1 (At4g39250) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195636.24e-71RAD-like 1
SwissprotF4JVB83e-72RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A178UXD08e-70A0A178UXD0_ARATH; RSM2
STRINGAT4G39250.11e-70(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Representative plantOGRP3471298
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  4. Kong H, et al.
    Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth.
    Plant J., 2007. 50(5): p. 873-85
    [PMID:17470057]
  5. Baxter CE,Costa MM,Coen ES
    Diversification and co-option of RAD-like genes in the evolution of floral asymmetry.
    Plant J., 2007. 52(1): p. 105-13
    [PMID:17672842]
  6. Hamaguchi A, et al.
    A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis.
    Biosci. Biotechnol. Biochem., 2008. 72(10): p. 2687-96
    [PMID:18838801]
  7. Machemer K, et al.
    Interplay of MYB factors in differential cell expansion, and consequences for tomato fruit development.
    Plant J., 2011. 68(2): p. 337-50
    [PMID:21707804]
  8. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]