PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G35610.1
Common NameF8D20.120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 271aa    MW: 28510.5 Da    PI: 4.6729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G35610.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.8e-05139160223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C++Cg+ F ++     H+r H
  AT4G35610.1 139 VCHICGRGFGSWKAVFGHMRAH 160
                  6*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSNPNPEKTK VDVTEEEKEE SDEQWSDEET NMREIVLGLP ALNISSRIFG ESSSVVEEDA  60
EKARLNEQAV LAAGLILAAA EEAVMKGMNE GSGSGGKKKS RPRISTQTDD EGDGLGEGEA  120
KKPKKKAKEL THPPKGPPVC HICGRGFGSW KAVFGHMRAH RDRNYQGFLP PPTFSAGAER  180
FVIPGLRSAF TIATVGGGSS GGVAVGGRSS GDFSGSGGGD APGSEGGRGS GIDLNVEPVE  240
QVEEATESGC IAKFDLNKSP PKDEEEEDKP K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128PKKKAKE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT4G35610
AtGenExpressAT4G35610
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G35610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G35610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0311350.0AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBankAL1615870.0AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195286.10.0zinc finger (C2H2 type) family protein
TrEMBLO817930.0O81793_ARATH; Zinc finger (C2H2 type) family protein
STRINGAT4G35610.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Representative plantOGRP1129035
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Bae MS,Cho EJ,Choi EY,Park OK
    Analysis of the Arabidopsis nuclear proteome and its response to cold stress.
    Plant J., 2003. 36(5): p. 652-63
    [PMID:14617066]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Rehrauer H, et al.
    AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.
    Plant Physiol., 2010. 152(2): p. 487-99
    [PMID:20032078]
  5. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]