PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G23550.1
Common NameATWRKY29, F9D16.20, WRKY29
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 304aa    MW: 33770.4 Da    PI: 7.0337
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G23550.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30134192259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eHnhe
  AT4G23550.1 134 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNPEKFTITYTNEHNHE 192
                  7**************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-31119194IPR003657WRKY domain
PROSITE profilePS5081132.822128194IPR003657WRKY domain
SuperFamilySSF1182903.92E-26128194IPR003657WRKY domain
SMARTSM007743.3E-36133193IPR003657WRKY domain
PfamPF031061.5E-25135192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDEGDLEAIV RGYSGSGDAF SGESSGTFSP SFCLPMETSS FYEPEMETSG LDELGELYKP  60
FYPFSTQTIL TSSVSLPEDS KPFRDDKKQR SHGCLLSNGS RADHIRISES KSKKSKKNQQ  120
KRVVEQVKEE NLLSDAWAWR KYGQKPIKGS PYPRSYYRCS SSKGCLARKQ VERNPQNPEK  180
FTITYTNEHN HELPTRRNSL AGSTRAKTSQ PKPTLTKKSE KEVVSSPTSN PMIPSADESS  240
VAVQEMSVAE TSTHQAAGAI EGRRLSNGLP SDLMSGSGTF PSFTGDFDEL LNSQEFFSGY  300
LWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-21124194877Probable WRKY transcription factor 4
2lex_A7e-21124194877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1865128030.0
Expression AtlasAT4G23550-
AtGenExpressAT4G23550-
Functional Description ? help Back to Top
Source Description
TAIREncodes WRKY DNA-binding protein 29 (WRKY29).
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Function -- GeneRIF ? help Back to Top
  1. Upon heat stress, AtBAG7 is sumoylated, proteolytically processed and translocated from the endoplasmic reticulum to the nucleus, where interaction with the WRKY29 transcription factor occurs.
    [PMID: 28032645]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G23550.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top
Source Upstream Regulator (A: Activate/R: Repress)
ATRM AT4G01250 (A), AT4G23550 (A)
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top
Source Target Gene (A: Activate/R: Repress)
ATRM AT2G19190(A), AT4G23550(A)
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G23550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423940.0AF442394.1 Arabidopsis thaliana WRKY transcription factor 29 (WRKY29) mRNA, complete cds.
GenBankBT0260710.0BT026071.1 Arabidopsis thaliana At4g23550 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194086.40.0WRKY family transcription factor
SwissprotQ9SUS10.0WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLA0A178V2E90.0A0A178V2E9_ARATH; WRKY family transcription factor
TrEMBLA0A384LHJ50.0A0A384LHJ5_ARATH; WRKY29
STRINGAT4G23550.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Representative plantOGRP1417875
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Asai T, et al.
    MAP kinase signalling cascade in Arabidopsis innate immunity.
    Nature, 2002. 415(6875): p. 977-83
    [PMID:11875555]
  4. de Torres M,Sanchez P,Fernandez-Delmond I,Grant M
    Expression profiling of the host response to bacterial infection: the transition from basal to induced defence responses in RPM1-mediated resistance.
    Plant J., 2003. 33(4): p. 665-76
    [PMID:12609040]
  5. Menke FL,van Pelt JA,Pieterse CM,Klessig DF
    Silencing of the mitogen-activated protein kinase MPK6 compromises disease resistance in Arabidopsis.
    Plant Cell, 2004. 16(4): p. 897-907
    [PMID:15020743]
  6. Navarro L, et al.
    The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis.
    Plant Physiol., 2004. 135(2): p. 1113-28
    [PMID:15181213]
  7. Zhou F, et al.
    High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression.
    Plant J., 2004. 39(6): p. 920-32
    [PMID:15341634]
  8. Miao Y,Laun T,Zimmermann P,Zentgraf U
    Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis.
    Plant Mol. Biol., 2004. 55(6): p. 853-67
    [PMID:15604721]
  9. Xie Z, et al.
    Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells.
    Plant Physiol., 2005. 137(1): p. 176-89
    [PMID:15618416]
  10. Liu XQ, et al.
    OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1.
    Cell Res., 2005. 15(8): p. 593-603
    [PMID:16117849]
  11. Serrano M, et al.
    Chemical interference of pathogen-associated molecular pattern-triggered immune responses in Arabidopsis reveals a potential role for fatty-acid synthase type II complex-derived lipid signals.
    J. Biol. Chem., 2007. 282(9): p. 6803-11
    [PMID:17166839]
  12. Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
    Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
    [PMID:17722694]
  13. Wan J, et al.
    A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis.
    Plant Cell, 2008. 20(2): p. 471-81
    [PMID:18263776]
  14. Peng Y, et al.
    OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice.
    Mol Plant, 2008. 1(3): p. 446-58
    [PMID:19825552]
  15. Yamaguchi Y,Huffaker A,Bryan AC,Tax FE,Ryan CA
    PEPR2 is a second receptor for the Pep1 and Pep2 peptides and contributes to defense responses in Arabidopsis.
    Plant Cell, 2010. 22(2): p. 508-22
    [PMID:20179141]
  16. Wan J,Zhang S,Stacey G
    Activation of a mitogen-activated protein kinase pathway in Arabidopsis by chitin.
    Mol. Plant Pathol., 2004. 5(2): p. 125-35
    [PMID:20565589]
  17. Schikora A, et al.
    N-acyl-homoserine lactone confers resistance toward biotrophic and hemibiotrophic pathogens via altered activation of AtMPK6.
    Plant Physiol., 2011. 157(3): p. 1407-18
    [PMID:21940998]
  18. Göhre V,Jones AM,Sklenář J,Robatzek S,Weber AP
    Molecular crosstalk between PAMP-triggered immunity and photosynthesis.
    Mol. Plant Microbe Interact., 2012. 25(8): p. 1083-92
    [PMID:22550958]
  19. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  20. Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY
    The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition.
    PLoS ONE, 2014. 9(2): p. e88951
    [PMID:24586453]
  21. Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME
    The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components.
    Mol. Plant Pathol., 2015. 16(9): p. 963-72
    [PMID:25727690]
  22. Jin J, et al.
    An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
    Mol. Biol. Evol., 2015. 32(7): p. 1767-73
    [PMID:25750178]
  23. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  24. Li Y,Williams B,Dickman M
    Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29.
    New Phytol., 2017. 214(2): p. 695-705
    [PMID:28032645]
  25. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]