PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G17810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 204aa    MW: 22280.7 Da    PI: 5.0235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G17810.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.4e-054668123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  AT4G17810.1 46 YTCNFCRREFRSAQALGGHMNVH 68
                 9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-64372No hitNo description
Gene3DG3DSA:3.30.160.609.1E-44470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-54669IPR007087Zinc finger, C2H2
SMARTSM003550.00734668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1984673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009025anatomyvascular leaf
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MNGGAWMWNP NKIEELEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA  60
LGGHMNVHRR DRASSRAHQG STVAAAARSG HGGMLLNSCA PPLPTTTLII QSTASNIEGL  120
SHFYQLQNPS GIFGNSGDMV NLYGTTSFPP SNLPFSMLNS PVEVPPRLIE YSTGDDESIG  180
SMKEATGTSV DELDLELRLG HHPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134168229superman protein
2l1o_A2e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO794769630.0
Genevisible245383_at0.0
Expression AtlasAT4G17810-
AtGenExpressAT4G17810-
ATTED-IIAT4G17810-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G17810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G17810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615470.0AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBankBT0108280.0BT010828.1 Arabidopsis thaliana At4g17810 mRNA, complete cds.
GenBankBT0113010.0BT011301.1 Arabidopsis thaliana At4g17810 gene, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankHM4533340.0HM453334.1 Arabidopsis lyrata palmate-like pentafoliata 1 transcription factor (PALM1) gene, complete cds.
GenBankZ973440.0Z97344.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_193516.21e-152C2H2 and C2HC zinc fingers superfamily protein
TrEMBLA0A178V2011e-151A0A178V201_ARATH; Uncharacterized protein
TrEMBLE2IBP81e-151E2IBP8_ARALY; Palmate-like pentafoliata 1 transcription factor
TrEMBLQ6NNI61e-151Q6NNI6_ARATH; At4g17810
STRINGAT4G17810.11e-152(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Representative plantOGRP5761581
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Hammond JP, et al.
    Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants.
    Plant Physiol., 2003. 132(2): p. 578-96
    [PMID:12805589]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Bezhani S, et al.
    Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED.
    Plant Cell, 2007. 19(2): p. 403-16
    [PMID:17293567]
  5. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]