PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G13620.1
Common NameERF062, F18A5.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 388aa    MW: 44254.6 Da    PI: 9.9831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G13620.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19231281256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  AT4G13620.1 231 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 281
                  59******9.**********955...5************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.63E-31230290No hitNo description
PROSITE profilePS5103222.682231288IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22231289IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-32231289IPR001471AP2/ERF domain
SMARTSM003807.6E-35231294IPR001471AP2/ERF domain
PfamPF008471.7E-12232281IPR001471AP2/ERF domain
PRINTSPR003674.3E-11232243IPR001471AP2/ERF domain
PRINTSPR003674.3E-11254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MITPIHTQHS LILVYINIYS PPILSKLRTG FILWTNTQKT NKKRNMEDQF PKIETSFMHD  60
KLLSSGIYGF LSSSTPPQLL GVPIFLEGMK SPLLPASSTP SYFVSPHDHE LTSSIHPSPV  120
ASVPWNFLES FPQSQHPDHH PSKPPNLTLF LKEPKLLELS QSESNMSPYH KYIPNSFYQS  180
DQNRNEWVEI NKTLTNYPSK GFGNYWLSTT KTQPMKSKTR KVVQTTTPTK LYRGVRQRHW  240
GKWVAEIRLP RNRTRVWLGT FETAEQAAMA YDTAAYILRG EFAHLNFPDL KHQLKSGSLR  300
CMIASLLESK IQQISSSQVS NSPSPPPPKV GTPEQKNHHM KMESGEDVMM KKQKSHKEVM  360
EGDGVQLSRM PSLDMDLIWD ALSFPHSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21230288463ATERF1
3gcc_A6e-21230288463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.333550.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306825510.0
Expression AtlasAT4G13620-
AtGenExpressAT4G13620-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G13620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Regulation -- Hormone ? help Back to Top
Source Hormone
AHDethylene
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9SVQ0
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G13620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_193098.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A178UV110.0A0A178UV11_ARATH; Uncharacterized protein
STRINGAT4G13620.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Representative plantOGRP1128257
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
    Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.
    Plant J., 2004. 38(2): p. 366-79
    [PMID:15078338]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. Weber H,Hellmann H
    Arabidopsis thaliana BTB/ POZ-MATH proteins interact with members of the ERF/AP2 transcription factor family.
    FEBS J., 2009. 276(22): p. 6624-35
    [PMID:19843165]