PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G13040.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 246aa    MW: 28658.7 Da    PI: 10.1899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G13040.3genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.6e-12137178351
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                   +GV++ k + +W A I++      +k+++lg+f + eeAa+++++a+ 
  AT4G13040.3 137 MRGVYY-K-NMKWQAAIKVE-----KKQIHLGTFSSQEEAARLYDRAAF 178
                  79**96.5.7*********6.....6********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.374125191IPR001471AP2/ERF domain
PfamPF008471.4E-6136179IPR001471AP2/ERF domain
SMARTSM003803.3E-5136193IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-10137181IPR016177DNA-binding domain
CDDcd000185.86E-12138189No hitNo description
Gene3DG3DSA:3.30.730.108.8E-9138183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRIHEKGGGG RRKVKHSEVD MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGIPNPNA  60
RAAYNPGPAE TVTTVIVEKK AIEERSRRTR SKHMHFRSDY SDISPVNSDS ISPKYQPPKR  120
RKQHRRKRVH NQEPCLMRGV YYKNMKWQAA IKVEKKQIHL GTFSSQEEAA RLYDRAAFMC  180
GREPNFELSE EVIRELKQQS WEEFLNCTRR TITNKKPKSR IEHEDTKINA SMPHQPEEEE  240
QDSDKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11027RRKVKHSEVDMVSLRRRR
2118127KRRKQHRRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.334240.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453401570.0
Expression AtlasAT4G13040-
AtGenExpressAT4G13040-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. At4g13040 (referred herein as Apetala 2 family protein involved in SA mediated disease defense 1 - APD1) is a positive regulator of disease defense that functions upstream of salicylic acid (SA) accumulation.
    [PMID: 24612849]
  2. At4g13040 At4g13040 At4g13040
    [PMID: 26063506]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G13040.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G11260
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G13040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216240.0AK221624.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-94-D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001154229.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ56XP91e-171ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLF4JS760.0F4JS76_ARATH; Integrase-type DNA-binding superfamily protein
STRINGAT4G13040.30.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Representative plantOGRP80221215
Publications ? help Back to Top
  1. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  2. Zhuang J, et al.
    Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.
    Biochem. Biophys. Res. Commun., 2008. 371(3): p. 468-74
    [PMID:18442469]
  3. Welling A,Palva ET
    Involvement of CBF transcription factors in winter hardiness in birch.
    Plant Physiol., 2008. 147(3): p. 1199-211
    [PMID:18467468]
  4. Gong W, et al.
    The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors.
    Mol Plant, 2008. 1(1): p. 27-41
    [PMID:19802365]
  5. Giri MK, et al.
    The Arabidopsis thaliana At4g13040 gene, a unique member of the AP2/EREBP family, is a positive regulator for salicylic acid accumulation and basal defense against bacterial pathogens.
    J. Plant Physiol., 2014. 171(10): p. 860-7
    [PMID:24612849]
  6. Chen WH,Li PF,Chen MK,Lee YI,Yang CH
    FOREVER YOUNG FLOWER Negatively Regulates Ethylene Response DNA-Binding Factors by Activating an Ethylene-Responsive Factor to Control Arabidopsis Floral Organ Senescence and Abscission.
    Plant Physiol., 2015. 168(4): p. 1666-83
    [PMID:26063506]