PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G01260.1
Common NameA_IG002N01.32
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 325aa    MW: 36223.9 Da    PI: 9.7202
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G01260.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.36.4e-35106205298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskki 95 
                  lf rl++eeDe +lLqG++df++k++ +psd+id+fye +k+sisf+v+k qlv+Ki +LKkKf+++v+k     k+++ ++fsk++dq++f+ls+ki
  AT4G01260.1 106 LFVRLFTEEDEAILLQGFLDFATKKE-NPSDHIDDFYESIKNSISFDVTKPQLVTKIGNLKKKFNGRVSKglkkGKNEEVMVFSKASDQNCFDLSRKI 202
                  799******************88888.****************************************99988778899999***************** PP

       DUF573  96 Wgs 98 
                  Wgs
  AT4G01260.1 203 WGS 205
                  *95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-26107204IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAPKQLKKIE NPVVSSSEEE ESASSGESAT SGEESDSSAD SPVKESSKKP VVVSKPSGSK  60
TTTKPESSTA AKRSFEKTDE MSKKKSKNSM GEEDVKKKDE TLKKNLFVRL FTEEDEAILL  120
QGFLDFATKK ENPSDHIDDF YESIKNSISF DVTKPQLVTK IGNLKKKFNG RVSKGLKKGK  180
NEEVMVFSKA SDQNCFDLSR KIWGSNGVLY SKSKNMRQVQ LGGSVKVDED DQEPQKHRFV  240
ISTLSSGQEL VSYLKVENPN SLGVDDTKWS AKLDKIKDGK QKRKMEKNLK KIQAKEEELS  300
MMRSEFVAAV TNVLSKQDNA SYSCK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184115840.0
Expression AtlasAT4G01260-
AtGenExpressAT4G01260-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G01260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G01260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614910.0AL161491.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankIG002N010.0AF007269.1 Arabidopsis thaliana BAC IG002N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192035.10.0DNA-binding storekeeper protein-related transcriptional regulator
SwissprotO046080.0STKLR_ARATH; Probable transcription factor At4g01260
TrEMBLA0A178UTW10.0A0A178UTW1_ARATH; Uncharacterized protein
STRINGAT4G01260.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1913277
Representative plantOGRP4222523
Publications ? help Back to Top
  1. Curaba J,Herzog M,Vachon G
    GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1.
    Plant J., 2003. 33(2): p. 305-17
    [PMID:12535344]