PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G00610.1
Common NameF6N23.29
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 328aa    MW: 37058 Da    PI: 7.5069
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G00610.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.45e-34148234297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  lfqrlw++eDeiv+LqG+i+f+++tgk++s+d+++f+e++k+sisf+v+++q+v+Kir++K+K+ +++k+         ++ehd+k++el+++iW 
  AT4G00610.1 148 LFQRLWTDEDEIVFLQGMIKFAKDTGKNVSEDMNGFFEKLKDSISFEVKTDQFVNKIRSMKRKYIENKKT---------TTEHDKKCYELAEIIWV 234
                  69****************************************************************9999.........99**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-24149233IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVSVQNLKTD QLLNFLFKNP TKFLSRFSPM AKNKTLVTPS TVKKSSDVAS TSKKLSGVAS  60
PAKKPSGVTS PVKKPLEAVA STSSEEEEED EPSSDSESGS ESESDTEAEP MTLAAAAPSS  120
SNEKRQSEGK PEEERAKTET ETGKKPLLFQ RLWTDEDEIV FLQGMIKFAK DTGKNVSEDM  180
NGFFEKLKDS ISFEVKTDQF VNKIRSMKRK YIENKKTTTE HDKKCYELAE IIWVSDGDAT  240
ALVKPKKKKL KVDEESDWFE RSFVDGAFKE LGPGVDEETW KKNWSLVPVK KRKRIEEKVK  300
SMQADELKTT WQKIDVVHEM RSLMAKYV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184113880.0
Expression AtlasAT4G00610-
AtGenExpressAT4G00610-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G00610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G00610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankF6N230.0AF058919.2 Arabidopsis thaliana BAC F6N23.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankAL1614720.0AL161472.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191970.10.0DNA-binding storekeeper protein-related transcriptional regulator
TrEMBLO652700.0O65270_ARATH; DNA-binding storekeeper protein-related transcriptional regulator
STRINGAT4G00610.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4222523
MalvidsOGEM31328181
Publications ? help Back to Top
  1. Curaba J,Herzog M,Vachon G
    GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1.
    Plant J., 2003. 33(2): p. 305-17
    [PMID:12535344]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]