PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G00210.1
Common NameASL22, F6N15.25, LBD31
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 220aa    MW: 23806.8 Da    PI: 5.6017
Description LOB domain-containing protein 31
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G00210.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.72e-38111121101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC++dCv+apyf + + +++f +vhk+FGasn +kll  +p ++r da+ +l+yeA ar+rdPvyG+vg+i++lq+q+++l+aela++
  AT4G00210.1  11 PCGACKFLRRKCVADCVFAPYFDSVEgTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYV 108
                  7*********************996659********************************************************************** PP

       DUF260  98 keel 101
                  +++l
  AT4G00210.1 109 QTQL 112
                  9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.41410112IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3711109IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSGSTTGCGG PCGACKFLRR KCVADCVFAP YFDSVEGTSH FTAVHKVFGA SNASKLLMMI  60
PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQVMN LQAELAYVQT QLSTLQGLPP  120
PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD  180
LSTFFGLENP VDEDGDLNAL AREFFTKYLT GGKYRPSSLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3741194123LOB family transfactor Ramosa2.1
5ly0_B1e-3741194123LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402556980.0
Expression AtlasAT4G00210-
AtGenExpressAT4G00210-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G00210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G00210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738550.0AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191932.41e-164LOB domain-containing protein 31
SwissprotO813221e-165LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A178UT631e-163A0A178UT63_ARATH; LBD31
STRINGAT4G00210.11e-164(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Representative plantOGRP40515100
Publications ? help Back to Top
  1. Iwakawa H, et al.
    The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
    Plant Cell Physiol., 2002. 43(5): p. 467-78
    [PMID:12040093]
  2. Shuai B,Reynaga-Peña CG,Springer PS
    The lateral organ boundaries gene defines a novel, plant-specific gene family.
    Plant Physiol., 2002. 129(2): p. 747-61
    [PMID:12068116]
  3. Borghi L,Bureau M,Simon R
    Arabidopsis JAGGED LATERAL ORGANS is expressed in boundaries and coordinates KNOX and PIN activity.
    Plant Cell, 2007. 19(6): p. 1795-808
    [PMID:17557810]
  4. Matsumura Y,Iwakawa H,Machida Y,Machida C
    Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
    Plant J., 2009. 58(3): p. 525-37
    [PMID:19154202]
  5. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  6. Valentine ME,Wolyniak MJ,Rutter MT
    Extensive phenotypic variation among allelic T-DNA inserts in Arabidopsis thaliana.
    PLoS ONE, 2012. 7(9): p. e44981
    [PMID:23028719]