PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G54430.1
Common NameSRS6, T12E18.120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 183aa    MW: 20326.3 Da    PI: 10.3
Description SHI-related sequence 6
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G54430.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702157.49.3e-49361733154
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                  +g++ C+dCGn+akk+C +eRCRtCCksrg++C thvkstW+p++ +r+                +++ s+rk++lk++kqs+ + + l++++s++e 
  AT3G54430.1  36 VGEKVCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRS----------------SSSPSERKKKLKIDKQSSPNVSLLPTTTSRQER 117
                  68999****************************************9998................35677888888999*****************99 PP

       DUF702 101 etss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                   +++ lP +++++avf+++rv+++++ +++e++Yq++v+i+Gh+fkG+L+++G+++
  AT3G54430.1 118 GFREgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHIFKGFLHYYGVDH 173
                  99888*******************9868899***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.8E-4138172IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.3E-274081IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.7E-29123171IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009851Biological Processauxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MLGLRNIILL SPPPTQITRP SLPPVNFAAV EDNNTVGEKV CRDCGNRAKK ECLFERCRTC  60
CKSRGYNCVT HVKSTWIPSS ATRSSSSPSE RKKKLKIDKQ SSPNVSLLPT TTSRQERGFR  120
EGLPGKIEAP AVFKRTRVTA ISNNEQAEIG YQATVTISGH IFKGFLHYYG VDHNKAFPCL  180
SQK
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible251900_at0.0
Expression AtlasAT3G54430-
AtGenExpressAT3G54430-
ATTED-IIAT3G54430-
Functional Description ? help Back to Top
Source Description
TAIRA member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G54430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G54430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4468890.0AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
GenBankAY0526750.0AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191011.11e-135SHI-related sequence 6
SwissprotQ9M2U41e-136SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBLA0A178VCM31e-132A0A178VCM3_ARATH; SRS6
STRINGAT3G54430.11e-134(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Representative plantOGRP13131549
Publications ? help Back to Top
  1. Fridborg I,Kuusk S,Robertson M,Sundberg E
    The Arabidopsis protein SHI represses gibberellin responses in Arabidopsis and barley.
    Plant Physiol., 2001. 127(3): p. 937-48
    [PMID:11706176]
  2. Kuusk S,Sohlberg JJ,Long JA,Fridborg I,Sundberg E
    STY1 and STY2 promote the formation of apical tissues during Arabidopsis gynoecium development.
    Development, 2002. 129(20): p. 4707-17
    [PMID:12361963]
  3. Rashotte AM,Carson SD,To JP,Kieber JJ
    Expression profiling of cytokinin action in Arabidopsis.
    Plant Physiol., 2003. 132(4): p. 1998-2011
    [PMID:12913156]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Kuusk S,Sohlberg JJ,Magnus Eklund D,Sundberg E
    Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner.
    Plant J., 2006. 47(1): p. 99-111
    [PMID:16740146]
  6. Klopffleisch K, et al.
    Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.
    Mol. Syst. Biol., 2011. 7: p. 532
    [PMID:21952135]
  7. Eklund DM, et al.
    Expression of Arabidopsis SHORT INTERNODES/STYLISH family genes in auxin biosynthesis zones of aerial organs is dependent on a GCC box-like regulatory element.
    Plant Physiol., 2011. 157(4): p. 2069-80
    [PMID:21976484]
  8. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]