PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G53820.1
Common NameF5K20_120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 142aa    MW: 16291.3 Da    PI: 8.8307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G53820.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122143123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C + Fs+   L  H++ H
  AT3G53820.1 21 YICEFCERGFSNAQALGGHMNIH 43
                 89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-61747IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.43E-71847No hitNo description
PROSITE profilePS5015711.242148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MNRKYLDRRS YSWSGSQARP YICEFCERGF SNAQALGGHM NIHRKDRAKL RQANLKEEDS  60
EDAICTTSRN RFGQELIELP FFVDTVGPRR KGEDDKSEKG LGDEEKKNMR ILQKALSQSA  120
DVIDLELRLG LDPYKKTTST ST
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184099270.0
Genevisible251911_at0.0
Expression AtlasAT3G53820-
AtGenExpressAT3G53820-
ATTED-IIAT3G53820-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G53820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G53820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566220.0DQ056622.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At3g53820) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankAL1329600.0AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190950.11e-103C2H2 and C2HC zinc fingers superfamily protein
TrEMBLQ9M3441e-103Q9M344_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGAT3G53820.11e-103(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19981133
MalvidsOGEM69912341
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]