PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G45150.1
Common NameT14D3.90, TCP16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 165aa    MW: 17997.8 Da    PI: 9.6318
Description TCP domain protein 16
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G45150.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP921.2e-28121413115
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg.......... 88 
                  +++++ +++h k ggRdRR+R++ ++a ++F L++eLGf++d++t+ WLlq+a+pai ++tg   +++s+++ +++++  s  +++ +          
  AT3G45150.1  12 KARRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATGHgvTTTSNEDIQPNRNFPSYTFNGDNisnnvfpctv 109
                  567889*********************************************************66444443444444444444333335566777777 PP

          TCP  89 .....kaaksaakskksqksaasalnlakesr 115
                       +++ +  ++  +++++++ + ++++ +
  AT3G45150.1 110 vntghRQMVFPVSTMTDHAPSTNYSTISDNYN 141
                  77777555555555555555555555555333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136923.4471771IPR017887Transcription factor TCP subgroup
PfamPF036343.8E-241787IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDSKNGINNS QKARRTPKDR HLKIGGRDRR IRIPPSVAPQ LFRLTKELGF KTDGETVSWL  60
LQNAEPAIFA ATGHGVTTTS NEDIQPNRNF PSYTFNGDNI SNNVFPCTVV NTGHRQMVFP  120
VSTMTDHAPS TNYSTISDNY NSTFNGNATA SDTTSAATTT ATTTV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO710367810.0
Expression AtlasAT3G45150-
AtGenExpressAT3G45150-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing microspores during pollen development. First observed at the tetrad stage, and later accumulates in an early unicellular stage. Levels decrease as the pollen grain matures. {ECO:0000269|PubMed:16786299}.
UniprotTISSUE SPECIFICITY: Mostly in anther in young buds. {ECO:0000269|PubMed:16786299}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during early processes in pollen development. {ECO:0000269|PubMed:16786299}.
Function -- GeneRIF ? help Back to Top
  1. TCP16, a putative transcription factor, plays a crucial role in early processes in pollen development.
    [PMID: 16786299]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G45150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G14920
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G45150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankAL1386490.0AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190101.11e-119transcription factor TCP16
SwissprotQ9M1U41e-121TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL83e-56D7LNL8_ARALL; Putative uncharacterized protein
STRINGAT3G45150.11e-119(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9221459
MalvidsOGEM157501016
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Takeda T, et al.
    RNA interference of the Arabidopsis putative transcription factor TCP16 gene results in abortion of early pollen development.
    Plant Mol. Biol., 2006. 61(1-2): p. 165-77
    [PMID:16786299]
  3. Aguilar-Martínez JA,Poza-Carrión C,Cubas P
    Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds.
    Plant Cell, 2007. 19(2): p. 458-72
    [PMID:17307924]
  4. Klopffleisch K, et al.
    Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.
    Mol. Syst. Biol., 2011. 7: p. 532
    [PMID:21952135]
  5. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  6. Viola IL,Reinheimer R,Ripoll R,Manassero NG,Gonzalez DH
    Determinants of the DNA binding specificity of class I and class II TCP transcription factors.
    J. Biol. Chem., 2012. 287(1): p. 347-56
    [PMID:22074922]
  7. Yang X, et al.
    Evolution of double positive autoregulatory feedback loops in CYCLOIDEA2 clade genes is associated with the origin of floral zygomorphy.
    Plant Cell, 2012. 24(5): p. 1834-47
    [PMID:22649271]
  8. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  9. Mar
    Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners.
    Plant Physiol., 2014. 166(2): p. 1022-32
    [PMID:25118255]