PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G18550.1
Common NameAtBRC1, ATTCP18, BRC1, K24M9.4, TBL1, TCP18
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 433aa    MW: 49675.5 Da    PI: 7.799
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G18550.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.76.8e-411463102135
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec....ea 75 
                  + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++ t                    s +++s+     + 
  AT3G18550.1 146 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIATTlshhgcfssgdeshirpvlgSMDTSSDLcelaS- 242
                  5799************************************************************999999988888888888874444444423331. PP

          TCP  76 esssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                       +++  +s+           + ++   k+k+++ ++    +l+ke+rakar+ra+ rt ekm++k k
  AT3G18550.1 243 ---MWTVDDRGSNtnttetrgnkvDGRSMRGKRKRPEPRTPILKKLSKEERAKARERAKGRTMEKMMMKMK 310
                  ...2222222222334456677775666666888888888888*************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-41147308IPR005333Transcription factor, TCP
PROSITE profilePS5136931.724148206IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.992287304IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000232anatomyaxillary bud meristem
PO:0004709anatomyaxillary bud
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ  60
FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH HPSLHFPLNN TIVEQPTEPS  120
ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ  180
DMLGFDKASK TVEWLLTQAK PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL  240
ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR  300
TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR  360
FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ GAANSIEQHQ FTDLHYSFGA  420
KPRDLMHNYQ NMY