PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G17010.1
Common NameK14A17.8, REM22
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 302aa    MW: 35287 Da    PI: 10.3848
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G17010.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-1921114198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk++ ++d ++ ++  lp +f+++ + +k  s +++++ ++g++W+v++  +k++   y+ t+GW  Fv++n L +++f++F++ g++ f  +v ++
  AT3G17010.1  21 FFKIFQRADLSSDCMRALPYSFISKVS-EKDFSYKMVIRAQWGKTWDVEV--SKNPTYyYIETRGWDLFVSDNALGQNEFITFTHRGNMVF--HVNIY 113
                  99*********************9995.456999****************..99999956667*********************9999999..88887 PP

                  - CS
           B3  98 r 98 
                  +
  AT3G17010.1 114 E 114
                  6 PP

2B336.77.4e-122112861394
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  ++ l +pk+f+++h   +++sk  t+++++g sW+v +    +  r+++++G ++ +++  L +gD ++Fkl++   fe+v+
  AT3G17010.1 211 LKFLAIPKHFVDDHI--PNKSKIFTIRHPNGGSWKVLC--LVREIRTIFSGGYSKLAREFPLMVGDKCTFKLIK--PFEFVL 286
                  45699******9995..457889***************..8888899************************987..555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-2016120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1717116IPR015300DNA-binding pseudobarrel domain
CDDcd100177.33E-1820113No hitNo description
PROSITE profilePS5086313.35221116IPR003340B3 DNA binding domain
PfamPF023622.6E-1721114IPR003340B3 DNA binding domain
SMARTSM010192.2E-2321116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-18198290IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.25199292IPR003340B3 DNA binding domain
CDDcd100171.50E-12200280No hitNo description
Gene3DG3DSA:2.40.330.102.5E-15200288IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.8E-17202292IPR003340B3 DNA binding domain
PfamPF023622.3E-10209285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009029anatomystamen
PO:0009046anatomyflower
PO:0009072anatomyplant ovary
PO:0020001anatomyovary placenta
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGKSSNIVFD RIKEERQMLS FFKIFQRADL SSDCMRALPY SFISKVSEKD FSYKMVIRAQ  60
WGKTWDVEVS KNPTYYYIET RGWDLFVSDN ALGQNEFITF THRGNMVFHV NIYEQNGLEM  120
RKPRKFQTMG PSSGIKKEEG ENSLIDVKKE EESDESPGRA EFLVRKKKTE DSKSSKKKMT  180
RNKVKKKSKS KSKQVLDGVP EFKITIRKSY LKFLAIPKHF VDDHIPNKSK IFTIRHPNGG  240
SWKVLCLVRE IRTIFSGGYS KLAREFPLMV GDKCTFKLIK PFEFVLLTSK KNREKMDQCM  300
ID
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.388040.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306843300.0
Genevisible257930_at0.0
Expression AtlasAT3G17010-
AtGenExpressAT3G17010-
ATTED-IIAT3G17010-
Functional Description ? help Back to Top
Source Description
TAIRtranscriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G17010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G17010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936180.0AB493618.1 Arabidopsis thaliana At3g17010 mRNA for hypothetical protein, partial cds, clone: RAAt3g17010.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188326.10.0transcriptional factor B3 family protein
SwissprotQ9LSP60.0Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLD7L6A01e-167D7L6A0_ARALL; Transcriptional factor B3 family protein
STRINGAT3G17010.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Publications ? help Back to Top
  1. Gómez-Mena C,de Folter S,Costa MM,Angenent GC,Sablowski R
    Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis.
    Development, 2005. 132(3): p. 429-38
    [PMID:15634696]
  2. Alves-Ferreira M, et al.
    Global expression profiling applied to the analysis of Arabidopsis stamen development.
    Plant Physiol., 2007. 145(3): p. 747-62
    [PMID:17905860]
  3. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  4. Romanel E, et al.
    Reproductive Meristem22 is a unique marker for the early stages of stamen development.
    Int. J. Dev. Biol., 2011. 55(6): p. 657-64
    [PMID:21948714]