PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G10470.1
Common NameF13M14.25, F18K10.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 398aa    MW: 42993.4 Da    PI: 7.95
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G10470.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047182204123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  AT3G10470.1 182 YQCKTCDRTFPSFQALGGHRASH 204
                  9***********99999998887 PP

2zf-C2H2130.00032261283123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  AT3G10470.1 261 HECGICGAEFTSGQALGGHMRRH 283
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-8181204No hitNo description
PfamPF139122.4E-12181206IPR007087Zinc finger, C2H2
SMARTSM003550.028182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471182209IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-8256283No hitNo description
Gene3DG3DSA:3.30.160.608.2E-4259285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-11260285IPR007087Zinc finger, C2H2
SMARTSM003550.047261283IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93261285IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS  60
LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT ADEEDQDMAN CLILLAQGHS  120
LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY  180
VYQCKTCDRT FPSFQALGGH RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP  240
NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV  300
AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF  360
ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.399200.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible258967_at0.0
Expression AtlasAT3G10470-
AtGenExpressAT3G10470-
ATTED-IIAT3G10470-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G10470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G10470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187658.10.0C2H2-type zinc finger family protein
TrEMBLA0A384L0E90.0A0A384L0E9_ARATH; Uncharacterized protein
TrEMBLQ7G8T10.0Q7G8T1_ARATH; C2H2-type zinc finger family protein
STRINGAT3G10470.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Representative plantOGRP23501035
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Mittler R, et al.
    Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress.
    FEBS Lett., 2006. 580(28-29): p. 6537-42
    [PMID:17112521]
  4. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  5. Reňák D,Dupl'áková N,Honys D
    Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis.
    Sex. Plant Reprod., 2012. 25(1): p. 39-60
    [PMID:22101548]