PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G10030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 542aa    MW: 59247.8 Da    PI: 6.558
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G10030.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.26.6e-21160246186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +L++a++++ ++l+rg+l++ +Weev++ +  r +++++s +qCk+k++nl+kryk ++++++++  ++ s++p+f+++e
  AT3G10030.1 160 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVseRCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSG-GTAASHWPWFKKME 246
                  5*************************************888899****************************9.556669*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-22158248No hitNo description
Gene3DG3DSA:3.40.1160.101.5E-67293534IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.31E-53301534IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.32E-120303535No hitNo description
PfamPF006966.5E-25304514IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008652Biological Processcellular amino acid biosynthetic process
GO:0016310Biological Processphosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0016301Molecular Functionkinase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ HHHHHQVLHH TPYAPRRFNP KPSNQILLPH HQRNGDEDDE  60
NDVVVEASSA FHGHGVNPFT ADENSNPYDD NNAAVDEDED EDLGANRSRI GGVRVEKRQS  120
QEELSDGGTT NGGEITPYGS FKRPRTSSSS AGEYRKDREE WSDAAIACLL DAYSDKFTQL  180
NRGNLRGRDW EEVASSVSER CEKLSKSVEQ CKNKIDNLKK RYKLERHRMS SGGTAASHWP  240
WFKKMEDIVG NSLALKGASD EDRSGSSMGN TVKPARRYPL VTYNPGVQIN NVKSKATSNP  300
RWRRVVLKIS GAALACTGPN NIDPKVINLI AREVAMACRL GVEVAIVVGS RNFFCGSTWV  360
TATGLDRTTA YHISMMASVM NSALLQSSLE KIGVQARLQT AISVQGVGEP YNRQRATRHL  420
DKGRVVIFGG IGATLGNPLL SSDASAALRA IDINAEAVVK GTNVDGVYDC HSQDSNVTFE  480
HISFQDLASR GLTSMDTMAL NFCEENSIPV VVFNFLEAGN ITKALCGEQV GTLIDRSGRG  540
VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek6_F3e-572945341239Uridylate kinase
3ek6_E3e-572945341239Uridylate kinase
3ek6_D3e-572945341239Uridylate kinase
3ek6_C3e-572945341239Uridylate kinase
3ek6_B3e-572945341239Uridylate kinase
3ek6_A3e-572945341239Uridylate kinase
3ek5_F3e-572945341239Uridylate kinase
3ek5_E3e-572945341239Uridylate kinase
3ek5_D3e-572945341239Uridylate kinase
3ek5_C3e-572945341239Uridylate kinase
3ek5_B3e-572945341239Uridylate kinase
3ek5_A3e-572945341239Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.287400.0flower| leaf| seed| silique| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible258885_at0.0
Expression AtlasAT3G10030-
AtGenExpressAT3G10030-
ATTED-IIAT3G10030-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G10030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G10030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566366.10.0aspartate/glutamate/uridylate kinase family protein
TrEMBLQ94JR10.0Q94JR1_ARATH; AT3g10030/T22K18_15
STRINGAT3G10030.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP61611218
MalvidsOGEM93052631
Publications ? help Back to Top
  1. Koroleva OA,Tomlinson ML,Leader D,Shaw P,Doonan JH
    High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions.
    Plant J., 2005. 41(1): p. 162-74
    [PMID:15610358]
  2. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  3. Reiland S, et al.
    Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
    Plant Physiol., 2009. 150(2): p. 889-903
    [PMID:19376835]