PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G04930.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 396aa    MW: 42883.5 Da    PI: 4.458
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G04930.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.49.5e-38137235298
       DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+kiW+
  AT3G04930.2 137 LFQRLWTDEDEIELLRGFLDYmTMHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWN 234
                  79*******************8899***99999****************************************************************8 PP

       DUF573  98 s 98 
                  +
  AT3G04930.2 235 Q 235
                  5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-34138234IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE  60
DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP AGSAVPVSVI PVDSDPKWHR  120
MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS  180
KLQLDFNKNQ LVEKLRRLKK KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII  240
GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS  300
RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM  360
NGTTSMMMAA MGGGFPGLGG GGGGGGGGGF VYNLLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302KRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.176420.0flower| leaf| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341850840.0
Expression AtlasAT3G04930-
AtGenExpressAT3G04930-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G04930.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G04930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0094650.0AC009465.7 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankAB4936010.0AB493601.1 Arabidopsis thaliana At3g04930 mRNA for hypothetical protein, partial cds, clone: RAAt3g04930.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001189809.10.0DNA-binding storekeeper protein-related transcriptional regulator
TrEMBLF4J6250.0F4J625_ARATH; DNA-binding storekeeper protein-related transcriptional regulator
STRINGAT3G04930.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Curaba J,Herzog M,Vachon G
    GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1.
    Plant J., 2003. 33(2): p. 305-17
    [PMID:12535344]
  2. Boyce JM, et al.
    The sfr6 mutant of Arabidopsis is defective in transcriptional activation via CBF/DREB1 and DREB2 and shows sensitivity to osmotic stress.
    Plant J., 2003. 34(4): p. 395-406
    [PMID:12753580]
  3. Tamura K,Fukao Y,Iwamoto M,Haraguchi T,Hara-Nishimura I
    Identification and characterization of nuclear pore complex components in Arabidopsis thaliana.
    Plant Cell, 2010. 22(12): p. 4084-97
    [PMID:21189294]