PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G04410.1
Common NameT27C4.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 76aa    MW: 8725.54 Da    PI: 4.4756
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G04410.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.51.7e-08453247
          NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.lelee..v.ikevdiykvePwdL 47
                 p+GfrF+Pt ee+v++yL++   + +  ++++  + +++ +  +  P++L
  AT3G04410.1  4 PVGFRFRPTKEEIVDHYLRPTNFDGDtSHVDRniMfMQDNRNDYRPPNSL 53
                 89*****************9876665333333212244444444455656 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-8357IPR003441NAC domain
PROSITE profilePS5100511.278376IPR003441NAC domain
PfamPF023652.6E-6434IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000191anatomysynergid
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MVNPVGFRFR PTKEEIVDHY LRPTNFDGDT SHVDRNIMFM QDNRNDYRPP NSLTGVFSDC  60
SSDDNDSDLL SPKTVS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183968781e-128
Genevisible258598_at1e-114
Expression AtlasAT3G04410-
AtGenExpressAT3G04410-
ATTED-IIAT3G04410-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G04410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G04410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222872e-65AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026862e-65CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187091.16e-50no apical meristem-domain containing transcriptional regulator
TrEMBLQ9M8467e-50Q9M846_ARATH; No apical meristem-domain containing transcriptional regulator
STRINGAT3G04410.12e-49(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Wuest SE, et al.
    Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes.
    Curr. Biol., 2010. 20(6): p. 506-12
    [PMID:20226671]